Glyma04g03560 - SoyBase

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Report for Sequence Feature Glyma04g03560

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2592040
stop:	2595421
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66730	AT	Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein \| chr5:26641914-26643883 REVERSE LENGTH=500	SoyBase	E_val: 3.00E-125	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009937	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of seed germination	SoyBase	N/A	ISS
GO:0010431	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed maturation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10593	Panther	SERINE/THREONINE-PROTEIN KINASE RIO	JGI		ISS
PF12171	PFAM	Zinc-finger double-stranded RNA-binding	JGI		ISS
UniRef100_B9R7R3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9R7R3_RICCO	SoyBase	E_val: 3.00E-146	ISS
UniRef100_I1JTC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTC7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03560

Paralog	Evidence	Comments
Glyma06g03630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g033300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03560

Limit To All Plant Sequences

>Glyma04g03560.1   sequence type=CDS   gene model=Glyma04g03560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGAACCTCAGAATCCTTCACCATTGACACATTCTCCAGCGTTAGAAATCACACCTCAACCACTGCTACCTCCCAAAAGGAAACGAAGCCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACGCTGTTGGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAAGGCTTCCAGCGCGACCAGAACCTACAGCTTCACCGGCGTGGCCACAACTTGCCGTGGAAGCTGCGGCAGCGAGGGAGCACAGAGCCGCGGAAGAAAGCTTACGTGTGTCCCGAACCTTCCTGCGTCCACCACAACCCCGCAAGGGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAACACGGTGAGAAAAAGTGGCAATGCGAACGCTGTTCTAAGAAATACGCCGTACACTCCGATTGGAAGGCTCATATGAAAACTTGCGGCAGCAGAGAATACCGATGCGACTGCGGAACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACAGAGCATTTTGCGATGTCTTAGCGCAAGAGAGCGCGAGGGCCCAGGCCCAGGCCCAAGGCCAAGGTGGTAGCAATAGCAAAGTGGTTGAGGCTTCTTCGCCGCCTACGCCTCCACTTACTCCCTCCGCGTCTGTGGTGCCTCCAACTTTGTCCATTCAGAGCTCAGAAATTCCGGAAAACCCATCAACGAAGCTGTCACCGACGTCTCCAAACGCAACAGCGTGTTTCGTGACAAGCAGCAGCAGCACCCCTTCCAATTCGACTACTTGCACCACTGTTTTTGCTAGTGTGTTGGCACCGTCCCCAACAACACCATCAACTCCACAATCACCATCAAATTCAACTTCCTCTTTCACCAACCTCATCTCAAACTTGGCTCGCTCGCAGAACCCCAATACCATTATGAGAGAATCCACGTCCCTCTCCCTCTCCACACCACTCTATCTCTCCAACAATGACCCTCTTCATTACACTGCATCACCCCAACCTGCACTATCTGCCACTGCACTACTCCAGAAGGCAGCGCAAATGGGTGCTTCAAATGCATCCCTTCTTCGTGGCCTAGGCTTAGCAACAACAACATCATCATCATCATCCTTCGGTAAAGACGAGGGTTTTAACATTAATGCAACCACAACACTACAATGGAACGGACAAGTGAAGCAAGAGAATCATCCAGTGGTGGATAACCTTGGGCTTGGGCTTCTCTGTGGGAGTGGAAGTGTGCCAGATGTGATGATGGCCCCTTCTACCCCATTTGTGGGCCAGCCCATGACCCGTGATCTTCTTGGTCTGAGCATCGGTGGCGGAGGAAGCAGGGGTGGTCTCTCTGCTTTACTCACTTCTTTTGGAGGAAACTTTGATTCACCCGGTGAAGGAGGAGTTCACCGGTAG

Predicted protein sequences of Glyma04g03560

Limit To All Plant Sequences

>Glyma04g03560.1   sequence type=predicted peptide   gene model=Glyma04g03560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEPQNPSPLTHSPALEITPQPLLPPKRKRSLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSTEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWQCERCSKKYAVHSDWKAHMKTCGSREYRCDCGTLFSRRDSFITHRAFCDVLAQESARAQAQAQGQGGSNSKVVEASSPPTPPLTPSASVVPPTLSIQSSEIPENPSTKLSPTSPNATACFVTSSSSTPSNSTTCTTVFASVLAPSPTTPSTPQSPSNSTSSFTNLISNLARSQNPNTIMRESTSLSLSTPLYLSNNDPLHYTASPQPALSATALLQKAAQMGASNASLLRGLGLATTTSSSSSFGKDEGFNINATTTLQWNGQVKQENHPVVDNLGLGLLCGSGSVPDVMMAPSTPFVGQPMTRDLLGLSIGGGGSRGGLSALLTSFGGNFDSPGEGGVHR*

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