Glyma04g03550 - SoyBase

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Report for Sequence Feature Glyma04g03550

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2574882
stop:	2583854
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G45150	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 219 Blast hits to 202 proteins in 78 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). \| chr1:17077615-17082330 REVERSE LENGTH=643	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JTC6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTC6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9MAJ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F27F5.22 n=1 Tax=Arabidopsis thaliana RepID=Q9MAJ5_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03550

Paralog	Evidence	Comments
Glyma06g03620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g033200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g03550

Limit To All Plant Sequences

>Glyma04g03550.2   sequence type=transcript   gene model=Glyma04g03550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAGTAGTTACTAGTCACACTATTAACATTGTTTCCCTTCCTCTGCCTTCCTTCCTTCTAATATCTGAATTGCCAACAAAACAAAGAAAAATCTTCCTTACTCTCAAACAAAACAAAACAAAACGCGATCATTTCTCCGCCGTAGCAGTGGAACAAACTCCACCGACTCCGTTATGGACAACTCCGGTTTGTCCTCACACTCCTTTTCTTCTCTTTCACTCTCGCAATTCACAGTTACTCCGTTTCGCAAATCTTTTAATGTTTACAACTCGAATCTAACCACAAAACCTTGCTGGTTTCGCCTGTTGAAATCCTCAAGATGTGGTTGTGCCACCTGTTGAAGGTGTTGCAGGAGGTGGTACGGCTTATGGGTGGAATGATGGTGGCACACATGGCTTGAATGTCAAGGGACCAATTGACCCCACAGAAATTCCAACTAAGGATTTAGTGCATGTATGGTGCATGCCAAACACAGCAAATGTTGGACCTCAAGATATGCCCAGACATTTGGAGCCTATAAACCTGCTGGCTGCTAGAAATGAGAGGGAGAGTGTGCAAATAGCTATCCGACCAAAGGTTTCATGGGGTGGTTCTAGTGTTGCAGGGACTGTGCAGATTCAGTGTAGTGACCTATGTTCCACATCTGGAGACAGACTGATTGTTGGGCAATCACTGCTGTTGCGGCGGGTGGTGCCCATTTTAGGTGTACCTGATGCTCTTGTTCCCGTTGATCTTCCAGTCAGTCAAATAAACCTATTTCCTGGGGAGACTACCGCTCTTTGGATATCCATTGACGTTCCAAGTTCTCAACCTCCAGGACAATATGAAGGAGAGATTGTCATTACTGCTATAAAATCAGATGCAGAATCTCCTGTTCAAAGTATAAGCAAGGTTGAGAAACATCAGCTGTATAGGGACCTAAAGGGATGTCTTGACATTGTTGAGCCCATTGATGGAAAACCATTAGATGAAGTGGTTGAAAGGGTGAAATCTACAACTACATCTTTGAGAAGGATTCTTCTGTCTCCATCATTTTCTGAATTCTTTTCAGATAATGGACCAGTAGACGTAATGGATGAGGATGCCATTTCAAGTCTCTCTTTACGGATGAAGTTAAATCTGACTGTTTGGGAATTTGTACTTCCTGAAACTCCTTCGCTCCCTGCTGTATTTGGTATATCTGATACTGTAATTGAGGATCGCTTTGGTGTTCAACAAGGGACAGCTGAGTGGTATGAAGCATTGGATCAGCATTTCAAATGGCTTCTTCAGTATAGAATCAGCCCTTATTTTTGTAAATGGGCTGATGGTATGCGTGTTTTGACGTACACATCTCCATGGCCAGCGGATCATCCAAAGTCGGATGAATATTTTTCAGATCCACGGTTGGCAGCATATGCTGTACCATATAAACAAGTAGTCTCCGGTAACAATTCGGCGGAGGATTACTTGCAGAAACAAGTTGAGATATTGAGGACCAAGAATCACTGGAGGAAAGCTTACTTTTACTTGTGGGATGAGCCACTGAATTTGGAACAATATGATTCTGTTCGAAATATGGCCAGTGAGATTCATGCTTATGCTCCAGATGCTCGTATTTTAACTACTTACTATTGTGGACCAAATGATGCACCTCTCGCACCTACTCCATTTGACGCTTTTGTAAAAGTTCCAAGTTTTCTGCGTCCTCATAATCAAATTTATTGTACTAGTGAGTGGGTTCTGGGCAATCAAGAGGACCTGGTTAAGGATATTATTGCTGAATTACAACCAGAGAATGGCGAGGAGTGGTGGACATATGTCTGTATGGGACCATCAGATCCTCATCCAAATTGGCATCTTGGAATGCGAGGTACCCAACACCGTGCCGTCATGTGGCGTGTGTGGAAAGAGGGTGGCACAGGATTTTTGTACTGGGGAGCCAACTGCTATGAGAAGGCAACTGTAGCCAGTGCAGAGATAAAATTCAGGCATGGTCTTCCCCCTGGAGATGGAGTTCTATACTATCCTGGTGAGGTGTTCTCAACTTCTCATCAGCCAGTGGCTTCTCTTAGACTAGAGCGCATACTTAATGGCTTGCAGGACACTGAGTACCTGAGACTATATGCTTCAAGATACGGTAGGGACGAGAGTATTGCACTTTTAGAAAGAATGGGAGTGTACTTTGGTCCTGAGCGTTACACATTTGAGCACATGCCAATTGATGCAATGAGAGGACAAATATTTAATGCCTGCCGTTCATGAATTGATATGTTATAGATGCTGTGCATTTTGGTCGAGTGGTTCATTTGTTGACAGCTAAAAAATTCAGGCTTCAGCATCTAACTTTCAAAGATGCGACAATTGACAGTAATCGAGTGAGATCCGTGGAATATCACCCAAATGCTGCACAATTTGAACTGTGTAGATATGGAATGTGACAGTGATATATATATATATAGTATCTGAAACGTAGTTAGATGAGAAATCTGTTGTTCATGCTGAAATGTGCCCTTCAACCGTACATAGGATCATAATCAATTAGAGTTAATGTTGCAGTGTGAGGATCGTTTATTTCGGAGACTTACTACTTTAACATGGTTGATGCGCGAGAGGAGTAATACTGTAAACTAGTTGAACTAGAGTAGTAGTAATATTGAAGAGAATGTTGAAGACCATGTTAGCAATCTTTACCTAGATATAGTTCGTCTATACTTGGTACATCGGATGTTGATTTCTTTTAAATTTGGGGCGGAAGACGGTATA

Coding sequences of Glyma04g03550

Limit To All Plant Sequences

>Glyma04g03550.1   sequence type=CDS   gene model=Glyma04g03550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACTCCGGAAATCCTCAAGATGTGGTTGTGCCACCTGTTGAAGGTGTTGCAGGAGGTGGTACGGCTTATGGGTGGAATGATGGTGGCACACATGGCTTGAATGTCAAGGGACCAATTGACCCCACAGAAATTCCAACTAAGGATTTAGTGCATGTATGGTGCATGCCAAACACAGCAAATGTTGGACCTCAAGATATGCCCAGACATTTGGAGCCTATAAACCTGCTGGCTGCTAGAAATGAGAGGGAGAGTGTGCAAATAGCTATCCGACCAAAGGTTTCATGGGGTGGTTCTAGTGTTGCAGGGACTGTGCAGATTCAGTGTAGTGACCTATGTTCCACATCTGGAGACAGACTGATTGTTGGGCAATCACTGCTGTTGCGGCGGGTGGTGCCCATTTTAGGTGTACCTGATGCTCTTGTTCCCGTTGATCTTCCAGTCAGTCAAATAAACCTATTTCCTGGGGAGACTACCGCTCTTTGGATATCCATTGACGTTCCAAGTTCTCAACCTCCAGGACAATATGAAGGAGAGATTGTCATTACTGCTATAAAATCAGATGCAGAATCTCCTGTTCAAAGTATAAGCAAGGTTGAGAAACATCAGCTGTATAGGGACCTAAAGGGATGTCTTGACATTGTTGAGCCCATTGATGGAAAACCATTAGATGAAGTGGTTGAAAGGGTGAAATCTACAACTACATCTTTGAGAAGGATTCTTCTGTCTCCATCATTTTCTGAATTCTTTTCAGATAATGGACCAGTAGACGTAATGGATGAGGATGCCATTTCAAGTCTCTCTTTACGGATGAAGTTAAATCTGACTGTTTGGGAATTTGTACTTCCTGAAACTCCTTCGCTCCCTGCTGTATTTGGTATATCTGATACTGTAATTGAGGATCGCTTTGGTGTTCAACAAGGGACAGCTGAGTGGTATGAAGCATTGGATCAGCATTTCAAATGGCTTCTTCAGTATAGAATCAGCCCTTATTTTTGTAAATGGGCTGATGGTATGCGTGTTTTGACGTACACATCTCCATGGCCAGCGGATCATCCAAAGTCGGATGAATATTTTTCAGATCCACGGTTGGCAGCATATGCTGTACCATATAAACAAGTAGTCTCCGGTAACAATTCGGCGGAGGATTACTTGCAGAAACAAGTTGAGATATTGAGGACCAAGAATCACTGGAGGAAAGCTTACTTTTACTTGTGGGATGAGCCACTGAATTTGGAACAATATGATTCTGTTCGAAATATGGCCAGTGAGATTCATGCTTATGCTCCAGATGCTCGTATTTTAACTACTTACTATTGTGGACCAAATGATGCACCTCTCGCACCTACTCCATTTGACGCTTTTGTAAAAGTTCCAAGTTTTCTGCGTCCTCATAATCAAATTTATTGTACTAGTGAGTGGGTTCTGGGCAATCAAGAGGACCTGGTTAAGGATATTATTGCTGAATTACAACCAGAGAATGGCGAGGAGTGGTGGACATATGTCTGTATGGGACCATCAGATCCTCATCCAAATTGGCATCTTGGAATGCGAGGTACCCAACACCGTGCCGTCATGTGGCGTGTGTGGAAAGAGGGTGGCACAGGATTTTTGTACTGGGGAGCCAACTGCTATGAGAAGGCAACTGTAGCCAGTGCAGAGATAAAATTCAGGCATGGTCTTCCCCCTGGAGATGGAGTTCTATACTATCCTGGTGAGGTGTTCTCAACTTCTCATCAGCCAGTGGCTTCTCTTAGACTAGAGCGCATACTTAATGGCTTGCAGGACACTGAGTACCTGAGACTATATGCTTCAAGATACGGTAGGGACGAGAGTATTGCACTTTTAGAAAGAATGGGAGTGTACTTTGGTCCTGAGCGTTACACATTTGAGCACATGCCAATTGATGCAATGAGAGGACAAATATTTAATGCCTGCCGTTCATGA

>Glyma04g03550.2   sequence type=CDS   gene model=Glyma04g03550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAACACAGCAAATGTTGGACCTCAAGATATGCCCAGACATTTGGAGCCTATAAACCTGCTGGCTGCTAGAAATGAGAGGGAGAGTGTGCAAATAGCTATCCGACCAAAGGTTTCATGGGGTGGTTCTAGTGTTGCAGGGACTGTGCAGATTCAGTGTAGTGACCTATGTTCCACATCTGGAGACAGACTGATTGTTGGGCAATCACTGCTGTTGCGGCGGGTGGTGCCCATTTTAGGTGTACCTGATGCTCTTGTTCCCGTTGATCTTCCAGTCAGTCAAATAAACCTATTTCCTGGGGAGACTACCGCTCTTTGGATATCCATTGACGTTCCAAGTTCTCAACCTCCAGGACAATATGAAGGAGAGATTGTCATTACTGCTATAAAATCAGATGCAGAATCTCCTGTTCAAAGTATAAGCAAGGTTGAGAAACATCAGCTGTATAGGGACCTAAAGGGATGTCTTGACATTGTTGAGCCCATTGATGGAAAACCATTAGATGAAGTGGTTGAAAGGGTGAAATCTACAACTACATCTTTGAGAAGGATTCTTCTGTCTCCATCATTTTCTGAATTCTTTTCAGATAATGGACCAGTAGACGTAATGGATGAGGATGCCATTTCAAGTCTCTCTTTACGGATGAAGTTAAATCTGACTGTTTGGGAATTTGTACTTCCTGAAACTCCTTCGCTCCCTGCTGTATTTGGTATATCTGATACTGTAATTGAGGATCGCTTTGGTGTTCAACAAGGGACAGCTGAGTGGTATGAAGCATTGGATCAGCATTTCAAATGGCTTCTTCAGTATAGAATCAGCCCTTATTTTTGTAAATGGGCTGATGGTATGCGTGTTTTGACGTACACATCTCCATGGCCAGCGGATCATCCAAAGTCGGATGAATATTTTTCAGATCCACGGTTGGCAGCATATGCTGTACCATATAAACAAGTAGTCTCCGGTAACAATTCGGCGGAGGATTACTTGCAGAAACAAGTTGAGATATTGAGGACCAAGAATCACTGGAGGAAAGCTTACTTTTACTTGTGGGATGAGCCACTGAATTTGGAACAATATGATTCTGTTCGAAATATGGCCAGTGAGATTCATGCTTATGCTCCAGATGCTCGTATTTTAACTACTTACTATTGTGGACCAAATGATGCACCTCTCGCACCTACTCCATTTGACGCTTTTGTAAAAGTTCCAAGTTTTCTGCGTCCTCATAATCAAATTTATTGTACTAGTGAGTGGGTTCTGGGCAATCAAGAGGACCTGGTTAAGGATATTATTGCTGAATTACAACCAGAGAATGGCGAGGAGTGGTGGACATATGTCTGTATGGGACCATCAGATCCTCATCCAAATTGGCATCTTGGAATGCGAGGTACCCAACACCGTGCCGTCATGTGGCGTGTGTGGAAAGAGGGTGGCACAGGATTTTTGTACTGGGGAGCCAACTGCTATGAGAAGGCAACTGTAGCCAGTGCAGAGATAAAATTCAGGCATGGTCTTCCCCCTGGAGATGGAGTTCTATACTATCCTGGTGAGGTGTTCTCAACTTCTCATCAGCCAGTGGCTTCTCTTAGACTAGAGCGCATACTTAATGGCTTGCAGGACACTGAGTACCTGAGACTATATGCTTCAAGATACGGTAGGGACGAGAGTATTGCACTTTTAGAAAGAATGGGAGTGTACTTTGGTCCTGAGCGTTACACATTTGAGCACATGCCAATTGATGCAATGAGAGGACAAATATTTAATGCCTGCCGTTCATGA

Predicted protein sequences of Glyma04g03550

Limit To All Plant Sequences

>Glyma04g03550.1   sequence type=predicted peptide   gene model=Glyma04g03550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNSGNPQDVVVPPVEGVAGGGTAYGWNDGGTHGLNVKGPIDPTEIPTKDLVHVWCMPNTANVGPQDMPRHLEPINLLAARNERESVQIAIRPKVSWGGSSVAGTVQIQCSDLCSTSGDRLIVGQSLLLRRVVPILGVPDALVPVDLPVSQINLFPGETTALWISIDVPSSQPPGQYEGEIVITAIKSDAESPVQSISKVEKHQLYRDLKGCLDIVEPIDGKPLDEVVERVKSTTTSLRRILLSPSFSEFFSDNGPVDVMDEDAISSLSLRMKLNLTVWEFVLPETPSLPAVFGISDTVIEDRFGVQQGTAEWYEALDQHFKWLLQYRISPYFCKWADGMRVLTYTSPWPADHPKSDEYFSDPRLAAYAVPYKQVVSGNNSAEDYLQKQVEILRTKNHWRKAYFYLWDEPLNLEQYDSVRNMASEIHAYAPDARILTTYYCGPNDAPLAPTPFDAFVKVPSFLRPHNQIYCTSEWVLGNQEDLVKDIIAELQPENGEEWWTYVCMGPSDPHPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGANCYEKATVASAEIKFRHGLPPGDGVLYYPGEVFSTSHQPVASLRLERILNGLQDTEYLRLYASRYGRDESIALLERMGVYFGPERYTFEHMPIDAMRGQIFNACRS*

>Glyma04g03550.2   sequence type=predicted peptide   gene model=Glyma04g03550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPNTANVGPQDMPRHLEPINLLAARNERESVQIAIRPKVSWGGSSVAGTVQIQCSDLCSTSGDRLIVGQSLLLRRVVPILGVPDALVPVDLPVSQINLFPGETTALWISIDVPSSQPPGQYEGEIVITAIKSDAESPVQSISKVEKHQLYRDLKGCLDIVEPIDGKPLDEVVERVKSTTTSLRRILLSPSFSEFFSDNGPVDVMDEDAISSLSLRMKLNLTVWEFVLPETPSLPAVFGISDTVIEDRFGVQQGTAEWYEALDQHFKWLLQYRISPYFCKWADGMRVLTYTSPWPADHPKSDEYFSDPRLAAYAVPYKQVVSGNNSAEDYLQKQVEILRTKNHWRKAYFYLWDEPLNLEQYDSVRNMASEIHAYAPDARILTTYYCGPNDAPLAPTPFDAFVKVPSFLRPHNQIYCTSEWVLGNQEDLVKDIIAELQPENGEEWWTYVCMGPSDPHPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGANCYEKATVASAEIKFRHGLPPGDGVLYYPGEVFSTSHQPVASLRLERILNGLQDTEYLRLYASRYGRDESIALLERMGVYFGPERYTFEHMPIDAMRGQIFNACRS*

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