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Report for Sequence Feature Glyma04g03540

Feature Type:gene_model
Chromosome:Gm04
Start:2569442
stop:2574304
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75150AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 38228 Blast hits to 24529 proteins in 1168 species: Archae - 169; Bacteria - 4103; Metazoa - 14594; Fungi - 5866; Plants - 1861; Viruses - 317; Other Eukaryotes - 11318 (source: NCBI BLink). | chr1:28204709-28208512 REVERSE LENGTH=784 SoyBaseE_val: 8.00E-76ISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q6ATQ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6ATQ3_ORYSJ SoyBaseE_val: 2.00E-52ISS
UniRef100_UPI0002339387UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339387 related cluster n=1 Tax=unknown RepID=UPI0002339387 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g03540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03540
ParalogEvidenceComments
Glyma06g03610 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g033100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03540
>Glyma04g03540.2   sequence type=CDS   gene model=Glyma04g03540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGCGACGACGACTTCGAGCTTTTGCCTCCTTCTCCCGTCCAAGAACGAAAGCTCAAGCGTTTGAAGAAAGCAGCTAGGGTTCCCGAACCTTCTCACCCTCCTATCTCTCCTCCCAATTTTTCCGTATCGGGAAACGGCGAAGAACACTTGACGGAGCCAAACGGCGAATCTGGGCCCGAATTTGAAACTTTGACCCCAAGCCCAAGCCCAAGCCCGAGCCCGAGCCCGAACCCGAACCCTCAATCTGACACTCCGAAAGGTGTAACCGTCGACGACGATGGTTTGGGCGCGAAGAGGGTTCTGGATTTTGATTCCTTCGGTGAGGAACTAGGGAAGGTTGTAGAGGAGACTGAAGAAGTTAGAGATCTGAAGACCTACGAAGAAATCAGGGATTTGAATACTGATGAAGTAGAGAGGAAACGACGAGGTTTAGATGACTTGCCAGAGAAGAACGAGAAGAAGAAGAGAATCAATGACGACGGTGACAGCAGCGAGAAGAAGCCTAAAGTATCTGCCACCAATAAGAGAAAGGCCGAGAAGGAACGACGAGATACTCTGAAACAGCTTCAAGCGGAGTCTCAGAGACTTCTTCGAGAAACTAGAGATGCGGCTTTTAAACCTGCTCCTCTGGTTCAGAAGCCAATTTCTTCGATATTGGAGAAAATTCGGCAGCGGAAATTGGAGATTTTAAAGAAATCTGCTGATAATGTAGAAAAGGCTGAACCGGAAGAAACACCAGCTTCTTGCCATGCAGCCACTAAATGTAATTTGGGCACGTCACATATTGGTGAAGAATCTAATGATGCTGCAGCTAATTCTAACTCTGAGAGCATTCCTTCTCCCATGGCCAAGGATTCAGAATCTGAGCATGCATTTCGAGCTCCTATTGGTGATACTCAGGAACTCTACACTGATTCTGAAAGAAGCGATACTAAAGATGAGGCTGTAAATGACAAGTCTAACAACCCTTCAGAAGAAGTGTTTGCCCCGTCAATGCTTGCAATGAACTTGAAACTTGATTCTGCTCCTCCTGATGATGACGTCTCTTCCAATGAGGAGGAGGAGGACAATGACAAGGAGAACATAGAGCCACACGTACATGTATCAGTTGACTTGACTTTATCACCAGATGGTGACCCTGTTAGGGCTTTTGTTGATGAAGAAGCTGAAGAGGAAGATGACAGTGATAATGACCTACAGCGTTTCCAAGATGATGAAGGTGAAGATGATGATGATATTGAGGAAGATGACATGATTGCAACTCAATATGAAGAAAAGCCAGATGATAGAGAAAAGCGTGAGCAACTCCACCAGCAGTGGCATGAGCAACGGGATGCAGCTGGAGTGGATAATCTACGTCAGAAATTCTATGGTGGTTCAAAATTGAATGAAACACCATCAACTGAAGAGGAAGATGAGGAAAGCAGAGAAACTGAAAATGATGATGAAGTTGAAGAATACGCAGCACCATCAGAAAGTCTGAAGACCACTCTGAAAAAGGTGAAGCAGATGATCCCACAGATGTTTTCAGATAAAGATGATAAATATGTATCATCTGATGATGAAGAAACTGAGGACAAGCTAGCTAGACAATCCCTCTATTATAAAACTGAAGAGAAAGCTAAATTCTTTTCACCAGCTGAGGACGAAAATAGCAGGGAAGTTTTCAGTCTCATAAAGAAATTAAACGTGCCTGATACCAAGAGAAAAGGAAAAACTACTTCCATCTTTGCTATGCCAAGCATTGGACAGAACATAAATATATCATCAAAGTCATCTTTTGTTGGAAGGGCTTCAGATCGTTTTATGCCTACTTCTCAAAAGCAGGGATCATGCAAGGTCCGATCATATATATTTGGGCGAGATGACAGCAACAGCAGGAGTTCAATATTGATCTCAGAGGATTCTTTAGATACGATTCAAACGGAGAGTCAACCACCAAAAGCGGCTTCTGCCAAGTTTCAAAGAAATACGCAGAACAAAAACACCACCATGAATTCTGCATCTAAGGAGTCAAATGTGTCGCTTTTGGATATATTAAGGAAGTCTTCACATCATGCAGATCACAGTTTCCAGAATGCCAACGTTCAACCAAAGACATCAATATTTGATGCATTCAAGTTAATGAAGAAGCCAACCAAGGCGGAGGCAAGAGTTTGA
Predicted protein sequences of Glyma04g03540
>Glyma04g03540.2   sequence type=predicted peptide   gene model=Glyma04g03540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDDDFELLPPSPVQERKLKRLKKAARVPEPSHPPISPPNFSVSGNGEEHLTEPNGESGPEFETLTPSPSPSPSPSPNPNPQSDTPKGVTVDDDGLGAKRVLDFDSFGEELGKVVEETEEVRDLKTYEEIRDLNTDEVERKRRGLDDLPEKNEKKKRINDDGDSSEKKPKVSATNKRKAEKERRDTLKQLQAESQRLLRETRDAAFKPAPLVQKPISSILEKIRQRKLEILKKSADNVEKAEPEETPASCHAATKCNLGTSHIGEESNDAAANSNSESIPSPMAKDSESEHAFRAPIGDTQELYTDSERSDTKDEAVNDKSNNPSEEVFAPSMLAMNLKLDSAPPDDDVSSNEEEEDNDKENIEPHVHVSVDLTLSPDGDPVRAFVDEEAEEEDDSDNDLQRFQDDEGEDDDDIEEDDMIATQYEEKPDDREKREQLHQQWHEQRDAAGVDNLRQKFYGGSKLNETPSTEEEDEESRETENDDEVEEYAAPSESLKTTLKKVKQMIPQMFSDKDDKYVSSDDEETEDKLARQSLYYKTEEKAKFFSPAEDENSREVFSLIKKLNVPDTKRKGKTTSIFAMPSIGQNINISSKSSFVGRASDRFMPTSQKQGSCKVRSYIFGRDDSNSRSSILISEDSLDTIQTESQPPKAASAKFQRNTQNKNTTMNSASKESNVSLLDILRKSSHHADHSFQNANVQPKTSIFDAFKLMKKPTKAEARV*






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