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Report for Sequence Feature Glyma04g03531

Feature Type:gene_model
Chromosome:Gm04
Start:2566858
stop:2567637
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03531
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19650AT Annotation by Michelle Graham. TAIR10: ovate family protein 8 | chr5:6639632-6640297 REVERSE LENGTH=221 SoyBaseE_val: 5.00E-24ISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF04844PFAM Protein of unknown function, DUF623 JGI ISS
UniRef100_I1K7S7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7S7_SOYBN SoyBaseE_val: 7.00E-112ISS
UniRef100_Q8GSM4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ovate protein n=2 Tax=Solanum lycopersicum RepID=Q8GSM4_SOLLC SoyBaseE_val: 5.00E-27ISS

Expression Patterns of Glyma04g03531
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g03531 not represented in the dataset
Glyma04g03531 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03531
ParalogEvidenceComments
Glyma06g03600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03531 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g033000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03531
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03531
>Glyma04g03531.1   sequence type=CDS   gene model=Glyma04g03531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAACGCTTCAAATTGAAGTTCAATATCCCTTCATTTCAAATGTGTCGCTCAAAAGACCCTTCCTCTTTCCCTGGAAATCCCGTTCCTGCCATATACCGTCTTTCTCCCGTTAACCACAACGCGCGTCACACGAGACATCCAAGCATTCCTTCTCCGTCACCGTCAAAGATAACGTCCATCGCGCAGGGATGCAAAATGTGCCATGACAAGCAGAGTTTGAAGAAACTGAAATCCATCAGAGGCCGGAAAAGCACGTCCAGCGTTCCGTCGAGGCGAAGCGATTTTCGAATCGACAACATCGAGGAAGAGGAGAGCGAGACTCTGATTTCTTGCATGACAAGTTTCTCCGACGAGTTTTGTCTCGGCGAGGAGAAGGAGCTAAGTACTGGTAGTAGCAGCCAGAGAAGGAAGATGAGCAGCGTAAAGAAGGTTCGGAGTGTGAGGTTTCAGAGTTCGGAGAAACGGAGAGGAGCGGAGGTGAAGAAGACGACGGTGACACGGAAAAGTGTGGAGGGGAAGGTGAGGGAGAGTTTTGCGGTAGTGAAGAAGTCAAAGGATCCTTATGAAGACTTCAAGAAATCGATGATGGAGATGATAACGGAGATGGAGATGTCTGAGGCCGAAGATTTGGAGCAGCTTTTGCAGTGTTTCTTGGCTTTGAACTCTCGGAGTCATCATGCAGTTATTGTGCGGGCTTTCATGGAGATTTGGCAACAAATGTTCTTTTGGAACCCTACGTCAATGAAAAATCTCCAAACAGATCTGGAAAAGTAA
Predicted protein sequences of Glyma04g03531
>Glyma04g03531.1   sequence type=predicted peptide   gene model=Glyma04g03531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKRFKLKFNIPSFQMCRSKDPSSFPGNPVPAIYRLSPVNHNARHTRHPSIPSPSPSKITSIAQGCKMCHDKQSLKKLKSIRGRKSTSSVPSRRSDFRIDNIEEEESETLISCMTSFSDEFCLGEEKELSTGSSSQRRKMSSVKKVRSVRFQSSEKRRGAEVKKTTVTRKSVEGKVRESFAVVKKSKDPYEDFKKSMMEMITEMEMSEAEDLEQLLQCFLALNSRSHHAVIVRAFMEIWQQMFFWNPTSMKNLQTDLEK*






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