SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g03510

Feature Type:gene_model
Chromosome:Gm04
Start:2552402
stop:2553678
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36660AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1195) | chr4:17285953-17287281 REVERSE LENGTH=179 SoyBaseE_val: 2.00E-39ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF06708PFAM Protein of unknown function (DUF1195) JGI ISS
UniRef100_I1JTC1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTC1_SOYBN SoyBaseE_val: 2.00E-108ISS
UniRef100_Q9FYX2UniRef Annotation by Michelle Graham. Most informative UniRef hit: BAC19.4 n=1 Tax=Solanum lycopersicum RepID=Q9FYX2_SOLLC SoyBaseE_val: 3.00E-40ISS

Expression Patterns of Glyma04g03510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03510
ParalogEvidenceComments
Glyma06g03576 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g032800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g03510
>Glyma04g03510.2   sequence type=transcript   gene model=Glyma04g03510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATGCTCCTATAATTTACTCATTAAATATTTTTTAATTCCTTAATTAATGTTTTAAGGATATTGATTATTAAAACTATTATTATTATTATTATTATTATTATTATTACTTCACCACCGTCCTGCCTATAATCCACACCTTAGTTACCAACCAATACCCACTTTGTTTTCGTGGCTTCGTTCTATACCAAAACCACTTTCCAAAGAAATATAAAACAAAGTAGAAGTAGTAGTAGTAAGTACTATCCATCACACCTCAGGTTTAACCAAAAGCATGAGAAAGAGAGGGAGCCATGAATATGATGGTGATTCTGGAAACACCAACAGCAAGAGGCACTTGTTGTTATGGATCTTAGCTGCGGTTATCCTCATTGCTCTTTGGTCCATGTTTGCTGGCTCCGTCACCCTCAAATGGTCCTTGAGCAACAACGATGACTTGGATTCTACCATTCTTGAAGACCTCGATGTGCTGGAAGTGGAAGAGAGAGAGAAGGTGGTGAGGCACATGTGGGATTTGTACAGTCACACGAACACGAAGTCCGTTGGATTACCCAAGTTTTGGTGGGAAGCTTTTGAAGCTGCTTACCAGCAATTGGTGAGTGATGTCCCTGCCGTCCGAGACGCCGCCGTTTCAGAAATTGCCAAGATGTCTCTGCGATCTCTTCCTATTCAAATTCAATCACACTCGGTATAACCAATATACTCCTTTACTATGTATAATAATATCTATGCCTCTCACTTAAATCAGGTTTTCTCTTTTCATGATGAGCATGTGCAGAGCATCACGGCTTCAAGAAAAATAAAGCAAGCAAAGAGTAGGACAGGACAGTGACCAATAACTAGAATCTTTCGTTTTGCTTGTATACTGTTGGGCTAGCTGCTTTCACAGTGAAGCAAGCATTCCAAATAGTAATTGCCTTATAATCTTACCTCCCAAATGAATAATAAATATCTTCATAGGTTTCAGGATTGAAAGCAAAGTACTTGCGTAATTCTTTACCAGTGCTTTAAGGGGCAGCTATTGATCATATTTTTGTGTATATCGCATTAGTGTTGTCATGCATTTACCAAACATCTAAAATTTCTTATGCTTAATCGTCACAAGCGAACATTCTATATCCATCTCTCAAACCCGAGAGGAGAAGCATATGAGAAAAATTCTGCATTAAGAATAATGGGAAAATGAC
Coding sequences of Glyma04g03510
>Glyma04g03510.1   sequence type=CDS   gene model=Glyma04g03510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAAGAGAGGGAGCCATGAATATGATGGTGATTCTGGAAACACCAACAGCAAGAGGCACTTGTTGTTATGGATCTTAGCTGCGGTTATCCTCATTGCTCTTTGGTCCATGTTTGCTGGCTCCGTCACCCTCAAATGGTCCTTGAGCAACAACGATGACTTGGATTCTACCATTCTTGAAGACCTCGATGTGCTGGAAGTGGAAGAGAGAGAGAAGGTGGTGAGGCACATGTGGGATTTGTACAGTCACACGAACACGAAGTCCGTTGGATTACCCAAGTTTTGGTGGGAAGCTTTTGAAGCTGCTTACCAGCAATTGGTGAGTGATGTCCCTGCCGTCCGAGACGCCGCCGTTTCAGAAATTGCCAAGATGTCTCTGCGATCTCTTCCTATTCAAATTCAATCACACTCGAGCATCACGGCTTCAAGAAAAATAAAGCAAGCAAAGAGTAGGACAGGACAGTGA

>Glyma04g03510.2   sequence type=CDS   gene model=Glyma04g03510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAAGAGAGGGAGCCATGAATATGATGGTGATTCTGGAAACACCAACAGCAAGAGGCACTTGTTGTTATGGATCTTAGCTGCGGTTATCCTCATTGCTCTTTGGTCCATGTTTGCTGGCTCCGTCACCCTCAAATGGTCCTTGAGCAACAACGATGACTTGGATTCTACCATTCTTGAAGACCTCGATGTGCTGGAAGTGGAAGAGAGAGAGAAGGTGGTGAGGCACATGTGGGATTTGTACAGTCACACGAACACGAAGTCCGTTGGATTACCCAAGTTTTGGTGGGAAGCTTTTGAAGCTGCTTACCAGCAATTGGTGAGTGATGTCCCTGCCGTCCGAGACGCCGCCGTTTCAGAAATTGCCAAGATGTCTCTGCGATCTCTTCCTATTCAAATTCAATCACACTCGGTATAA
Predicted protein sequences of Glyma04g03510
>Glyma04g03510.1   sequence type=predicted peptide   gene model=Glyma04g03510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKRGSHEYDGDSGNTNSKRHLLLWILAAVILIALWSMFAGSVTLKWSLSNNDDLDSTILEDLDVLEVEEREKVVRHMWDLYSHTNTKSVGLPKFWWEAFEAAYQQLVSDVPAVRDAAVSEIAKMSLRSLPIQIQSHSSITASRKIKQAKSRTGQ*

>Glyma04g03510.2   sequence type=predicted peptide   gene model=Glyma04g03510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKRGSHEYDGDSGNTNSKRHLLLWILAAVILIALWSMFAGSVTLKWSLSNNDDLDSTILEDLDVLEVEEREKVVRHMWDLYSHTNTKSVGLPKFWWEAFEAAYQQLVSDVPAVRDAAVSEIAKMSLRSLPIQIQSHSV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo