Glyma04g03490 - SoyBase

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Report for Sequence Feature Glyma04g03490

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2531873
stop:	2540627
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42740	AT	Annotation by Michelle Graham. TAIR10: Sugar isomerase (SIS) family protein \| chr5:17136080-17140622 FORWARD LENGTH=560	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004347	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate isomerase activity	SoyBase	N/A	ISS
KOG2446	KOG	Glucose-6-phosphate isomerase	JGI		ISS
PTHR11469	Panther	GLUCOSE-6-PHOSPHATE ISOMERASE	JGI		ISS
PF00342	PFAM	Phosphoglucose isomerase	JGI		ISS
UniRef100_I1JTB8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-6-phosphate isomerase n=1 Tax=Glycine max RepID=I1JTB8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JTB8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glucose-6-phosphate isomerase n=1 Tax=Glycine max RepID=I1JTB8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03490

Paralog	Evidence	Comments
Glyma06g03560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g032600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g03490

Limit To All Plant Sequences

>Glyma04g03490.2   sequence type=transcript   gene model=Glyma04g03490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCCGCTTATCCCAGTGTTTCCCTTCTTTTTGTTTTGAAAAAAGTACTAGAATATTTTAAAAATAAATGTGAAATAATTTTTATATTTTTAACAAATATTTTGTACTTTTATTCCGTCAAGGTGTAAGTTGTAACCTTTGCCACTGGGCTCCGACTTACATCCAACGCACAAAGCGAGTCACTCACTCATGGCATCCTCCGCTCTCATCTCCGACACCCAGCAATGGAAGGACCTCAAGGCACATGTGGAGGACATCAATAAAACACATCTTCGCGATCTATTGAGCGATGATAAGCGGTGCCAGTCCATGCTCGTTGAATTCGATGACATTCTGTTGGACTATTCAAGGCAACAAGCCACTCCTGAAACTATCCAGAAGCTATTTGAATTAGCGGAGGCTGCATCGCTCAAAGAAAAGATTATCCGCATGTACAGTGGGGAACATATAAATAGCACAGAAAATAGATCAGTGCTTCATGTCGCTCTTCGAGCTTCAAGGGATGCTGTCATACAGAGTGATGGGCAGAATGTTGTCCCTGAAGTTTGGAAAGTTCTTGACAAGATCCAGGAGTTCTCTGAGCAGATTCGCAATGGTTCTTGGGTTGGTGCTACAGGAAAGGCTTTGAAGGACGTTGTTGCAATTGGTATTGGGGGAAGCTTCTTAGGTCCACTGTTTGTACACACTGCACTTCAAACAGACCCCGAAGCTGTTGAATCTGCAAGGGGTCGTCAGCTGCGCTTTCTTGCAAATGTTGATCCTATTGACGTGGCTAGAAATATCACAGGATTAAATCCTGAAACAACACTTGTTGTGGTTGTTTCAAAGACTTTTACAACTGCTGAGACTATGCTGAATGCTCGAACTCTTAGAGAATGGATTTCATCAGCACTTGGGCCCTCTGCAGTTGCAAAGCATATGGTGGCTGTTAGCACAAATCTCACGCTTGTGGAAAAGTTTGGTATTGATCCTAAAAATGCTTTTGCATTTTGGGATTGGGTCGGTGGTCGGTATAGTGTTTGCAGTGCTGTTGGAATTTTGCCATTATCTCTACAATACGGTTTCTCTGTGATAGAGAAGTTCTTAAGGGGGGCTTCAAGCATTGATCAACATTTCTATTCGCAGCCATTTGAAAGCAATATACCTGTGCTTCTGGGTTTGTTGAGCATATGGAATGTTACATTTCTTGGATATCCTGCCAGAGCCATCTTACCTTATAGTCAAGCTCTGGAGAAGTTTGCCCCACACATTCAACAGGTTAGCATGGAGAGTAATGGAAAGGGTGTCTCGATTGATGGCGTCCCTCTACCATTTGAGGCTGGTGAAATTGATTTTGGTGAACCTGGAACTAATGGGCAGCATAGCTTTTATCAGCTCATACATCAGGGGCGTGTAATTCCTTGTGATTTTATTGGAGTTGTGAAAAGTCAGCAACCTGTCTTTCTAAAAGGTGAAGTGGTGAGTAACCATGATGAGCTAATGTCCAACTATTTTGCACAGTCTGATGCCCTTGCATATGGGAAGACAGCTGAGCAGCTACAAAAGGAGAATGTTTCCCCACACCTTATTCCTCACAAGACATTCAGCGGCAATCGACCTTCTCTCAGCCTACTGCTTCCATCATTGAATGCTTATAATATTGGGCAGGTATGAAGTTCACAAGGTTGTAATTAGTAATTAGAGGGAAATGGTTAATTCCTGTTTGCGGAAGTTTTAATTGTGTCAGTTACTTGTTTTCTTCAGCATGTTTGGCTGGAAAATTAG

Coding sequences of Glyma04g03490

Limit To All Plant Sequences

>Glyma04g03490.1   sequence type=CDS   gene model=Glyma04g03490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCTCCGCTCTCATCTCCGACACCCAGCAATGGAAGGACCTCAAGGCACATGTGGAGGACATCAATAAAACACATCTTCGCGATCTATTGAGCGATGATAAGCGGTGCCAGTCCATGCTCGTTGAATTCGATGACATTCTGTTGGACTATTCAAGGCAACAAGCCACTCCTGAAACTATCCAGAAGCTATTTGAATTAGCGGAGGCTGCATCGCTCAAAGAAAAGATTATCCGCATGTACAGTGGGGAACATATAAATAGCACAGAAAATAGATCAGTGCTTCATGTCGCTCTTCGAGCTTCAAGGGATGCTGTCATACAGAGTGATGGGCAGAATGTTGTCCCTGAAGTTTGGAAAGTTCTTGACAAGATCCAGGAGTTCTCTGAGCAGATTCGCAATGGTTCTTGGGTTGGTGCTACAGGAAAGGCTTTGAAGGACGTTGTTGCAATTGGTATTGGGGGAAGCTTCTTAGGTCCACTGTTTGTACACACTGCACTTCAAACAGACCCCGAAGCTGTTGAATCTGCAAGGGGTCGTCAGCTGCGCTTTCTTGCAAATGTTGATCCTATTGACGTGGCTAGAAATATCACAGGATTAAATCCTGAAACAACACTTGTTGTGGTTGTTTCAAAGACTTTTACAACTGCTGAGACTATGCTGAATGCTCGAACTCTTAGAGAATGGATTTCATCAGCACTTGGGCCCTCTGCAGTTGCAAAGCATATGGTGGCTGTTAGCACAAATCTCACGCTTGTGGAAAAGTTTGGTATTGATCCTAAAAATGCTTTTGCATTTTGGGATTGGGTCGGTGGTCGGTATAGTGTTTGCAGTGCTGTTGGAATTTTGCCATTATCTCTACAATACGGTTTCTCTGTGATAGAGAAGTTCTTAAGGGGGGCTTCAAGCATTGATCAACATTTCTATTCGCAGCCATTTGAAAGCAATATACCTGTGCTTCTGGGTTTGTTGAGCATATGGAATGTTACATTTCTTGGATATCCTGCCAGAGCCATCTTACCTTATAGTCAAGCTCTGGAGAAGTTTGCCCCACACATTCAACAGGTTAGCATGGAGAGTAATGGAAAGGGTGTCTCGATTGATGGCGTCCCTCTACCATTTGAGGCTGGTGAAATTGATTTTGGTGAACCTGGAACTAATGGGCAGCATAGCTTTTATCAGCTCATACATCAGGGGCGTGTAATTCCTTGTGATTTTATTGGAGTTGTGAAAAGTCAGCAACCTGTCTTTCTAAAAGGTGAAGTGGTGAGTAACCATGATGAGCTAATGTCCAACTATTTTGCACAGTCTGATGCCCTTGCATATGGGAAGACAGCTGAGCAGCTACAAAAGGAGAATGTTTCCCCACACCTTATTCCTCACAAGACATTCAGCGGCAATCGACCTTCTCTCAGCCTACTGCTTCCATCATTGAATGCTTATAATATTGGGCAGTTGTTGGCAATCTATGAACACAGAATTGCTGTAGAGGGTTTCATTTGGGGAATCAATTCTTTTGATCAGTGGGGAGTAGAGCTGGGGAAGTCACTGGCTACTCAAGTCAGAAAGCAACTTAATGCATCTCGTACTAAAGGAGAACCAGTTCAGGGCTTTAATTTCAGTACTACAACAATGTTGACAAGATATCTTCAGGCAAGTTCAGATGTCCCAGCGGATCTGCCAACTGTTTTACCGAAGATCTAA

>Glyma04g03490.2   sequence type=CDS   gene model=Glyma04g03490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCTCCGCTCTCATCTCCGACACCCAGCAATGGAAGGACCTCAAGGCACATGTGGAGGACATCAATAAAACACATCTTCGCGATCTATTGAGCGATGATAAGCGGTGCCAGTCCATGCTCGTTGAATTCGATGACATTCTGTTGGACTATTCAAGGCAACAAGCCACTCCTGAAACTATCCAGAAGCTATTTGAATTAGCGGAGGCTGCATCGCTCAAAGAAAAGATTATCCGCATGTACAGTGGGGAACATATAAATAGCACAGAAAATAGATCAGTGCTTCATGTCGCTCTTCGAGCTTCAAGGGATGCTGTCATACAGAGTGATGGGCAGAATGTTGTCCCTGAAGTTTGGAAAGTTCTTGACAAGATCCAGGAGTTCTCTGAGCAGATTCGCAATGGTTCTTGGGTTGGTGCTACAGGAAAGGCTTTGAAGGACGTTGTTGCAATTGGTATTGGGGGAAGCTTCTTAGGTCCACTGTTTGTACACACTGCACTTCAAACAGACCCCGAAGCTGTTGAATCTGCAAGGGGTCGTCAGCTGCGCTTTCTTGCAAATGTTGATCCTATTGACGTGGCTAGAAATATCACAGGATTAAATCCTGAAACAACACTTGTTGTGGTTGTTTCAAAGACTTTTACAACTGCTGAGACTATGCTGAATGCTCGAACTCTTAGAGAATGGATTTCATCAGCACTTGGGCCCTCTGCAGTTGCAAAGCATATGGTGGCTGTTAGCACAAATCTCACGCTTGTGGAAAAGTTTGGTATTGATCCTAAAAATGCTTTTGCATTTTGGGATTGGGTCGGTGGTCGGTATAGTGTTTGCAGTGCTGTTGGAATTTTGCCATTATCTCTACAATACGGTTTCTCTGTGATAGAGAAGTTCTTAAGGGGGGCTTCAAGCATTGATCAACATTTCTATTCGCAGCCATTTGAAAGCAATATACCTGTGCTTCTGGGTTTGTTGAGCATATGGAATGTTACATTTCTTGGATATCCTGCCAGAGCCATCTTACCTTATAGTCAAGCTCTGGAGAAGTTTGCCCCACACATTCAACAGGTTAGCATGGAGAGTAATGGAAAGGGTGTCTCGATTGATGGCGTCCCTCTACCATTTGAGGCTGGTGAAATTGATTTTGGTGAACCTGGAACTAATGGGCAGCATAGCTTTTATCAGCTCATACATCAGGGGCGTGTAATTCCTTGTGATTTTATTGGAGTTGTGAAAAGTCAGCAACCTGTCTTTCTAAAAGGTGAAGTGGTGAGTAACCATGATGAGCTAATGTCCAACTATTTTGCACAGTCTGATGCCCTTGCATATGGGAAGACAGCTGAGCAGCTACAAAAGGAGAATGTTTCCCCACACCTTATTCCTCACAAGACATTCAGCGGCAATCGACCTTCTCTCAGCCTACTGCTTCCATCATTGAATGCTTATAATATTGGGCAGGTATGA

Predicted protein sequences of Glyma04g03490

Limit To All Plant Sequences

>Glyma04g03490.1   sequence type=predicted peptide   gene model=Glyma04g03490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSALISDTQQWKDLKAHVEDINKTHLRDLLSDDKRCQSMLVEFDDILLDYSRQQATPETIQKLFELAEAASLKEKIIRMYSGEHINSTENRSVLHVALRASRDAVIQSDGQNVVPEVWKVLDKIQEFSEQIRNGSWVGATGKALKDVVAIGIGGSFLGPLFVHTALQTDPEAVESARGRQLRFLANVDPIDVARNITGLNPETTLVVVVSKTFTTAETMLNARTLREWISSALGPSAVAKHMVAVSTNLTLVEKFGIDPKNAFAFWDWVGGRYSVCSAVGILPLSLQYGFSVIEKFLRGASSIDQHFYSQPFESNIPVLLGLLSIWNVTFLGYPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVFLKGEVVSNHDELMSNYFAQSDALAYGKTAEQLQKENVSPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLNASRTKGEPVQGFNFSTTTMLTRYLQASSDVPADLPTVLPKI*

>Glyma04g03490.2   sequence type=predicted peptide   gene model=Glyma04g03490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSALISDTQQWKDLKAHVEDINKTHLRDLLSDDKRCQSMLVEFDDILLDYSRQQATPETIQKLFELAEAASLKEKIIRMYSGEHINSTENRSVLHVALRASRDAVIQSDGQNVVPEVWKVLDKIQEFSEQIRNGSWVGATGKALKDVVAIGIGGSFLGPLFVHTALQTDPEAVESARGRQLRFLANVDPIDVARNITGLNPETTLVVVVSKTFTTAETMLNARTLREWISSALGPSAVAKHMVAVSTNLTLVEKFGIDPKNAFAFWDWVGGRYSVCSAVGILPLSLQYGFSVIEKFLRGASSIDQHFYSQPFESNIPVLLGLLSIWNVTFLGYPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVFLKGEVVSNHDELMSNYFAQSDALAYGKTAEQLQKENVSPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQV*

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