Glyma04g03440 - SoyBase

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Report for Sequence Feature Glyma04g03440

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2515980
stop:	2520457
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47330	AT	Annotation by Michelle Graham. TAIR10: CBS domain-containing protein with a domain of unknown function (DUF21) \| chr1:17351149-17353739 FORWARD LENGTH=527	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2118	KOG	Predicted membrane protein, contains two CBS domains	JGI		ISS
PTHR12064	Panther	ANCIENT CONSERVED DOMAIN PROTEIN-RELATED	JGI		ISS
PF01595	PFAM	Domain of unknown function DUF21	JGI		ISS
UniRef100_E4MXR8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-28-M03 n=1 Tax=Eutrema halophilum RepID=E4MXR8_THEHA	SoyBase	E_val: 0	ISS
UniRef100_I1JTB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTB5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03440

Paralog	Evidence	Comments
Glyma06g03530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g032100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03440

Limit To All Plant Sequences

>Glyma04g03440.1   sequence type=CDS   gene model=Glyma04g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGGAGATACCGTGCTGTGGAACAAAGTTTTCACTGTACGTTTTGGTGATCATAGGTTTGGTCTGCTTCGCGGGACTAATGGCTGGTCTCACTCTCGGACTCATGTCTTTGGGACTCGTCGACCTCGAAGTTCTCATCAAATCTGGTCGTCCTCAGGATCGCATCCACGCTTCGAAAATTTATCCGGTTGTTAAGAACCAGCATCTTCTGCTTTGCACGCTTTTAATTGGAAACTCCTTAGCCATGGAGGCTCTTCCCATTTTTCTTGATTCACTGGTGCATCCCGCTGCGGCAATCTTGATTTCGGTCACGCTCATCCTCATGTTTGGAGAGATATTGCCCCAAGCAATTTGTACAAGATATGGATTGACGGTTGGAGCCACGCTGGCTCCACTTGTTCGGGTTCTTCTTATAGTTTTCTTCCCGCTTTCTTATCCTATCAGCAAGGTTCTTGATTGGATGTTGGGTAAAGGACATGCTGCCCTTTTAAAGAGGGCAGAGCTCAAGACTTTTGTGAATTTTCATGGAAATGAGGCTGGTAAAGGAGGAGATTTAACTCATGACGAGACAACCATCATAACTGGTGCACTTGACTTGACAGAAAAGACTGCAAAAGATGCCATGACTCCCATATCAAAGGCATTTTCCCTTGATCTGGATGCAACTCTAAATTTGGAGACACTGAATTCAATAATGACAATTGGTCATAGTAGAGTTCCAGTTTATGCAGGAGAAAAAACCAATATTATTGGACTTGTTCTGGTTAAAAATCTCTTTATGGTTGATTCAAAGGCTGCAGTTCCCCTAAGAAAAATGCTCATCAGAAAAATTCCTCGTGTTTCAGAGAACATGCCTCTGTACGATATACTGAACGAATTTCAGAAGGGTCACAGTCATATTGCAGTTGTGTATAGGGACCTAAATGATAAAAATGAAGCCCCAAAAAAAGTTAAAGATGGGGAACTACTTGATCTTAAGGACAAGCGTAAGAATAAAGGAGAGAAGACATCCTTGGATAAAGGTGAGAAATTGGAGTCGCATTATTCTTTGACTACAGATGGTGCTCAGCAAGCAAAGAAAAGTCCACCAGCAACTCCTGCTTTTAAAAAGCGACATAGAGGTTGTTCATATTGCATCCTGGACCTTGATAATTCTCCCCTGCCAGTGTTTCCTCCCAATGAAGTGGTTGTTGGTGTTATTACAATGGAGGATGTCATTGAAGAGCTTCTTCAGGAGGAGATACTAGATGAAACTGATGAATATGTCAATATCCATAACAAGATAAAAGTTAACATGAATGCTTCTAAGGAGAAGGCTCCTGATGCAAATATGTTGCTGCCTTCACAAGCAGTTCAAGGACACACACCAACTAATTCAATTTCTACAGCTACTTCTGCAACGGGCTCACCTACCACAATTGATCTAATCTCAGAAAGTGAGTCACTAAGGAATCGATAA

Predicted protein sequences of Glyma04g03440

Limit To All Plant Sequences

>Glyma04g03440.1   sequence type=predicted peptide   gene model=Glyma04g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAEIPCCGTKFSLYVLVIIGLVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHASKIYPVVKNQHLLLCTLLIGNSLAMEALPIFLDSLVHPAAAILISVTLILMFGEILPQAICTRYGLTVGATLAPLVRVLLIVFFPLSYPISKVLDWMLGKGHAALLKRAELKTFVNFHGNEAGKGGDLTHDETTIITGALDLTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTIGHSRVPVYAGEKTNIIGLVLVKNLFMVDSKAAVPLRKMLIRKIPRVSENMPLYDILNEFQKGHSHIAVVYRDLNDKNEAPKKVKDGELLDLKDKRKNKGEKTSLDKGEKLESHYSLTTDGAQQAKKSPPATPAFKKRHRGCSYCILDLDNSPLPVFPPNEVVVGVITMEDVIEELLQEEILDETDEYVNIHNKIKVNMNASKEKAPDANMLLPSQAVQGHTPTNSISTATSATGSPTTIDLISESESLRNR*

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