Glyma04g03390 - SoyBase

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Report for Sequence Feature Glyma04g03390

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2468113
stop:	2472988
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75230	AT	Annotation by Michelle Graham. TAIR10: DNA glycosylase superfamily protein \| chr1:28234444-28236452 FORWARD LENGTH=391	SoyBase	E_val: 8.00E-147	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006284	GO-bp	Annotation by Michelle Graham. GO Biological Process: base-excision repair	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG1918	KOG	3-methyladenine DNA glycosidase	JGI		ISS
PF00730	PFAM	HhH-GPD superfamily base excision DNA repair protein	JGI		ISS
UniRef100_B9R7V3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-3-methyladenine glycosylase, putative n=1 Tax=Ricinus communis RepID=B9R7V3_RICCO	SoyBase	E_val: 3.00E-178	ISS
UniRef100_I1JTA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTA6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03390

Paralog	Evidence	Comments
Glyma06g03470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g031600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03390

Limit To All Plant Sequences

>Glyma04g03390.1   sequence type=CDS   gene model=Glyma04g03390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGAACAGACGCTAGGTCAAGCACAATCCCTAATCGAACCTCAACCTCTCCCCGCCCCCTCCTCAACTGCCGTCCCCGACGGTGCCACGGTGGACTCCGAACTAAACAATGTCCCTCGGCCGACAACATCCCCAGCCACGAAAATCCCCCTCCGTCCCCGCAAGATCCGGAAGGTCTCTCCGGACCCCTCCACCTCCGAATCCCAAACCGAAACCCCCAAACCCGCCAAAACCGGGGGCCGCAACACCACCAAGGCTGCTCCGCCGCGAGCCCTTACGGTGGTCCCTCGTATAGTGGCGCGCTCACTCTCCTGCGACGGTGAAGTCGAGATCGCGCTCCGGTACCTCCGCAACGCGGACCCAGTCCTCTCCCCTCTCATCGACATTCACCAACCCCCAACCTTCGACAATTTCCACACTCCCTTCCTCGCCCTAACCCGCAGCATCTTGTACCAGCAACTCGCGTACAAAGCCGGCACCTCCATCTACACGCGCTTCATCGCGCTCTGCGGGGGCGAAAACGGTGTCGTTCCCGAAACCGTTCTCGCCCTAACACCCCAACAGCTTCGCCAGATTGGGGTTTCTGGGCGGAAGGCGAGTTACCTTCATGATTTGGCGAGGAAGTATCAGAACGGGATACTCTCCGATTCCGCCATTGTGAACATGGATGATAAGTCGCTCTTTACCATGCTCACCATGGTCAATGGCATTGGCTCTTGGTCTGTTCACATGTTCATGATTTTCTCACTCCACAGACCCGATGTTCTCCCCATCAATGACCTTGGCGTCAGGAAAGGAGTTCAGCTTCTCTACAACCTCGAGGACTTACCCCGGCCCTCGCAGATGGACCAGTTGTGTGACAAGTGGAGGCCTTACCGGTCCGTTGCTTCGTGGTACATGTGGAGATTTGTTGAAGCCAAGGGAACTCCTTCGAGTGCGGTGGCGGTAGCGACCGGTGCTGGCTTGCAGCAGCAGCAGCACCACCAGCACCATCACCAGCACCAACAACAGGAACAACAACAGCAGCAGCAGCAGCAACAGCAGCATCCTCCACAGCCACAGCTTCTGGATCCCATCAATAGCATGTTTAATCTCGGGGCCGCCTGTGCTTGGGGACAATGA

Predicted protein sequences of Glyma04g03390

Limit To All Plant Sequences

>Glyma04g03390.1   sequence type=predicted peptide   gene model=Glyma04g03390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEQTLGQAQSLIEPQPLPAPSSTAVPDGATVDSELNNVPRPTTSPATKIPLRPRKIRKVSPDPSTSESQTETPKPAKTGGRNTTKAAPPRALTVVPRIVARSLSCDGEVEIALRYLRNADPVLSPLIDIHQPPTFDNFHTPFLALTRSILYQQLAYKAGTSIYTRFIALCGGENGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYNLEDLPRPSQMDQLCDKWRPYRSVASWYMWRFVEAKGTPSSAVAVATGAGLQQQQHHQHHHQHQQQEQQQQQQQQQQHPPQPQLLDPINSMFNLGAACAWGQ*

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