Glyma04g03371 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g03371

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2460924
stop:	2462852
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03371

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_C5LBW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GRA11, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBW0_PERM5	SoyBase	E_val: 1.00E-17	ISS
UniRef100_I1JTA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JTA4_SOYBN	SoyBase	E_val: 3.00E-95	ISS

Expression Patterns of Glyma04g03371

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g03371 not represented in the dataset	Glyma04g03371 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03371

Paralog	Evidence	Comments
Glyma06g03463	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03371 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g031400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03371

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03371

Limit To All Plant Sequences

>Glyma04g03371.1   sequence type=CDS   gene model=Glyma04g03371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGATATCATTTGTTTTTATGCTGTTGGCTCTGCCATTATGTTTAGTTTTGGGCCAAGAAGATTGGGAGGATCTTCTGGGCCAAGGAGGATTCTCTCAAGATGCTTTGAACAAGGCCCAGGCAGCTTTAGGTGCTGCTTCTGCCCAAGCAGCTGTCAATGATTATTTTGGACTTGACGACTCTCCTCCGGAAGCCGCGCATGGAGAACAATCATCCTTGGCTGACTTTTTAGACGCCGACAATAGTACAAGTAACGACAAAGGAGCTTCACCCACAGGGTCAACAACAGTAGAAGCACCAGAAGATTCACCTGTAGACGACGTTGATGAATCCGATGATTCTTTCTCACCTGCAGGGGCACCACTAAATTGGCCCAATGAGGCACCTAATCAAGCACCAAGCAATGCACCAATGGGAGCATCATTAGAAGCACCTGAATTAGCACCTACAGAAACACCAACAGAAGCACCTGAGTTAGCACCTACAGAAACACCAACAGAAGCACCTGAGTTAGCACCTACAGAAACACCAACAGAAGCACCTGAATTGGCACCTACAGATGCACCTGAATTGACACCTACAGATGCACCAACAGAAGCACCTGAATCAACATCCACAAATGCACCAGCAAAAACACCTGAATTGGCACCAACAACAAATGCACCTATGCAATCACCTACAGTTGAAGAGGCTGACGAAGACGAATTGGCACCAACAAATGCACCTACTGGGGAACCAGATGATGAAGACGAGTTTGATGATTCTCCATCAGCACTCACAAATTACGATAATGATGACGATTCATAA

Predicted protein sequences of Glyma04g03371

Limit To All Plant Sequences

>Glyma04g03371.1   sequence type=predicted peptide   gene model=Glyma04g03371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKISFVFMLLALPLCLVLGQEDWEDLLGQGGFSQDALNKAQAALGAASAQAAVNDYFGLDDSPPEAAHGEQSSLADFLDADNSTSNDKGASPTGSTTVEAPEDSPVDDVDESDDSFSPAGAPLNWPNEAPNQAPSNAPMGASLEAPELAPTETPTEAPELAPTETPTEAPELAPTETPTEAPELAPTDAPELTPTDAPTEAPESTSTNAPAKTPELAPTTNAPMQSPTVEEADEDELAPTNAPTGEPDDEDEFDDSPSALTNYDNDDDS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain