Report for Sequence Feature Glyma04g03340
Feature Type: gene_model
Chromosome: Gm04
Start: 2451325
stop: 2452365
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g03340
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G75260 AT
Annotation by Michelle Graham. TAIR10: oxidoreductases, acting on NADH or NADPH | chr1:28247854-28249395 FORWARD LENGTH=513
SoyBase E_val: 1.00E-27 ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016651 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H
SoyBase N/A ISS
UniRef100_B9R7W2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase, putative n=1 Tax=Ricinus communis RepID=B9R7W2_RICCO
SoyBase E_val: 2.00E-31 ISS
UniRef100_I1JTA1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JTA1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g03340
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g03340
Paralog Evidence Comments
Glyma06g03441 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g03340 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g031100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g03340
Coding sequences of Glyma04g03340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g03340.1 sequence type=CDS gene model=Glyma04g03340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCACGGAAAAAGCAGCAATGTGGTTTTAGGATCCCTTGGATCTCAGGTCCTTCCACTGAATCTCATTCTCCTCCTCCAAAACAAAAATCAAAATCTGTTTCCACTCATCATCGACCACCATTTCGTCCTCCTGGAATAGCCTCTACCCCTCCACAACCTCCTCCGAATGGAACCCCAAAATCTAAACCTCAACAAGTGTCAAATTTTCTTCCATCACACTCACCAGCACCTTCAGTGATCATTAATTCCCCAGTGTCTTTTCAGCCAGAATCCCTTTCTACACCTTCAGAGCCAAATGTGGAGGAATTGGAGTTGGATAGTACTCCTACTCAGAATTCCAATTCCAATGCCCCTTTGGAAACACAAAGCAAACCCCACCAATCTAAATCAAATGGCAACACCATAGAGAGAAAGATGATGGTTGCCACGTCCACTCCTAGCGGGAAAGACATCCAAGTGGTGCCACCAGCTTCAACATCAGCGACCATACCATTATCCCACGAGGAAAACCCCACTATCCAAAAAGATATTAATGATATTTCAGCTCTGAATCCAACATTGAACGTGGATGACAAAACAATTAGTGTGGTAACTCTGGCTGGTGACAACAGAGGAGTGACAATGCACGTGGCGGGTTCTCACTCAACTAGGCCCAAACCTGAAGGTAAGAAGAGCGCGTCCACGGAGAAAGATGAAGCGGGGAAGACATACGTAAACAGCAACATTCAGAGCATCAACAATTCGATCATGTCGAACGGTTCCATCAATGGAAGAGACCCTGGTGTTCGTGTTATTCTCCCCCAACAGCCTCAGCCTGATGTGAAACAACCGTGTTTGGAAAAACCTAAGGCTGAAGTTAGCATTAACCGTGTGGAGAGGGTGCCTTACCGGCCCGTTGTTCGAAGACGATGCCTCAGGGGACTTTTCCATGAACCCAGTGACTCTGAACCTCATAACCCTGACAAGCCTCGTCGTCATGGTTGCAAGTTTAGATGCGGAGACATTGATATAAAGGATAAGGATGCTGCAACAAAATAA
Predicted protein sequences of Glyma04g03340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g03340.1 sequence type=predicted peptide gene model=Glyma04g03340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPRKKQQCGFRIPWISGPSTESHSPPPKQKSKSVSTHHRPPFRPPGIASTPPQPPPNGTPKSKPQQVSNFLPSHSPAPSVIINSPVSFQPESLSTPSEPNVEELELDSTPTQNSNSNAPLETQSKPHQSKSNGNTIERKMMVATSTPSGKDIQVVPPASTSATIPLSHEENPTIQKDINDISALNPTLNVDDKTISVVTLAGDNRGVTMHVAGSHSTRPKPEGKKSASTEKDEAGKTYVNSNIQSINNSIMSNGSINGRDPGVRVILPQQPQPDVKQPCLEKPKAEVSINRVERVPYRPVVRRRCLRGLFHEPSDSEPHNPDKPRRHGCKFRCGDIDIKDKDAATK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
