Glyma04g03330 - SoyBase

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Report for Sequence Feature Glyma04g03330

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2446812
stop:	2449903
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19530	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:6763976-6764686 FORWA	SoyBase	E_val: 3.00E-19	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009061	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaerobic respiration	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B4YYB7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ST225 n=1 Tax=Eutrema halophilum RepID=B4YYB7_THEHA	SoyBase	E_val: 4.00E-20	ISS
UniRef100_I1JT98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT98_SOYBN	SoyBase	E_val: 6.00E-100	ISS

Expression Patterns of Glyma04g03330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03330

Paralog	Evidence	Comments
Glyma06g03420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g030900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g03330

Limit To All Plant Sequences

>Glyma04g03330.2   sequence type=transcript   gene model=Glyma04g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCATTATCATCATCATTATCCCTTAACATCCAAAACCTATGGATGTGACACTTTTGTTCACTCATCACAATCTAAAATCCTTGCCAAGAGATAAGAACAAAATAGAGAAACAATCCGGAGCTTCGTCACTACACTGACCAGCACTATATATATATATATCAAGAAATAGGTCATCGATTTAGAAAGGCATTGGAGGAGCTAGTGTGGCTTAGTCGCTAAATTTGTTACGATAAAGAAATTAATTCAGCAACAAATATAATGGGTTCTCTTATGGCAGGATGGGACTCTCTGATCTTGGATCCTGAATCAGCTACAATAGAGAGGAATCGATCACTCACCAAAGAAGAAATTAATGCTTACTGGAGAGTAAAGAAGGAGACAGAGTTAGAACACCTCAGAGCTATGTCCAAACTATCTGAGACTATTCAGGCCCGAAAATTTGAGGATTCAGAGAATTCTCATAAGTCAAGTACCGTGACCTTGGCCAGCATAAAGGAGTCCTTAGGCATGGACGTTGACCAGAAAAGTTTAGAGCAACTTATCAAGAAAAATGGCTGGTGGACCAAAAGCAGCTGGGCATTTCTGAATGAACCGCCAGTGATAGAAGCGGCTTCCAATAAAGGCAACTCTTACAATCAAAGAGGGATTAGCTATCAGCCATTCGGTGTTCGTGAAGGGTGACCACACTAACTTTGAGATTGATCCTTCTTTTGGGGTTGAGGCTTCCCAGTTGTACCCTTATGTCAACTACACCGCTGTGGAAGAATACCTTGACACGTTCGTTTGAGAATTTAAAAAGCAAGGATGCACGTCTGTGCTCTTGTTTGCTATGTAAACTAGTTAATGTTTTACCTGACTAGTTGAAAATTGAAAATGCTATGTAAACTTGTTTCTGTTATGCTTTTTCCTTCCTATGTTTTAGCTGCTTCACAACAATACCTACTAGATTGGAAGCTGAGTGAAGGAACAGTATAGGACAAGAATGAAATGAGCTTTTTCAT

>Glyma04g03330.3   sequence type=transcript   gene model=Glyma04g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCATTATCATCATCATTATCCCTTAACATCCAAAACCTATGGATGTGACACTTTTGTTCACTCATCACAATCTAAAATCCTTGCCAAGAGATAAGAACAAAATAGAGAAACAATCCGGAGCTTCGTCACTACACTGACCAGCACTATATATATATATATCAAGAAATAGGTCATCGATTTAGAAAGGCATTGGAGGAGCTAGTGTGGCTTAGTCGCTAAATTTGTTACGATAAAGAAATTAATTCAGCAACAAATATAATGGGTTCTCTTATGGCAGGATGGGACTCTCTGATCTTGGATCCTGAATCAGCTACAATAGAGAGGAATCGATCACTCACCAAAGAAGAAATTAATGCTTACTGGAGAGTAAAGAAGGAGACAGAGTTAGAACACCTCAGAGCTATGTCCAAACTATCTGAGACTATTCAGGCCCGAAAATTTGAGGATTCAGAGAATTCTCATAAGTCAAGTACCGTGACCTTGGCCAGCATAAAGGAGTCCTTAGGCATGGACGTTGACCAGAAAAGTTTAGAGCAACTTATCAAGAAAAATGGCTGAAAATGATTGGGGTTAATGCAGGTGGACCAAAAGCAGCTGGGCATTTCTGAATGAACCGCCAGTGATAGAAGCGGCTTCCAATAAGTATGCATCACAGTTTCACGTGGCCAACTTGGGGTCTACGAAACTTAACCCCGGAGATGGAATTAATGCTTGATATGAGTTTTTTTCACGTTATATATCATATCCACGACTATAGTTTCGTATCTATATGTGTAATGGCTTCTATTTTGTCACTTACAATTCTGCATAAGAACTCTGTATTTCTGGTTTGTTTGAAAAGGGATGCAAAAATCCCAACAGATTTTAAAGAGAGAATATTGAACTGATTTGACTTTGTGGTTAA

Coding sequences of Glyma04g03330

Limit To All Plant Sequences

>Glyma04g03330.1   sequence type=CDS   gene model=Glyma04g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTCTTATGGCAGGATGGGACTCTCTGATCTTGGATCCTGAATCAGCTACAATAGAGAGGAATCGATCACTCACCAAAGAAGAAATTAATGCTTACTGGAGAGTAAAGAAGGAGACAGAGTTAGAACACCTCAGAGCTATGTCCAAACTATCTGAGACTATTCAGGCCCGAAAATTTGAGGATTCAGAGAATTCTCATAAGTCAAGTACCGTGACCTTGGCCAGCATAAAGGAGTCCTTAGGCATGGACGTTGACCAGAAAAGTTTAGAGCAACTTATCAAGAAAAATGGCTGGTGGACCAAAAGCAGCTGGGCATTTCTGAATGAACCGCCAGTGATAGAAGCGGCTTCCAATAAGTATGCATCACAGTTTCACGTGGCCAACTTGGGGTCTACGAAACTTAACCCCGGAGATGGAATTAATGCTTGA

>Glyma04g03330.2   sequence type=CDS   gene model=Glyma04g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTCTTATGGCAGGATGGGACTCTCTGATCTTGGATCCTGAATCAGCTACAATAGAGAGGAATCGATCACTCACCAAAGAAGAAATTAATGCTTACTGGAGAGTAAAGAAGGAGACAGAGTTAGAACACCTCAGAGCTATGTCCAAACTATCTGAGACTATTCAGGCCCGAAAATTTGAGGATTCAGAGAATTCTCATAAGTCAAGTACCGTGACCTTGGCCAGCATAAAGGAGTCCTTAGGCATGGACGTTGACCAGAAAAGTTTAGAGCAACTTATCAAGAAAAATGGCTGGTGGACCAAAAGCAGCTGGGCATTTCTGAATGAACCGCCAGTGATAGAAGCGGCTTCCAATAAAGGCAACTCTTACAATCAAAGAGGGATTAGCTATCAGCCATTCGGTGTTCGTGAAGGGTGA

>Glyma04g03330.3   sequence type=CDS   gene model=Glyma04g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTCTTATGGCAGGATGGGACTCTCTGATCTTGGATCCTGAATCAGCTACAATAGAGAGGAATCGATCACTCACCAAAGAAGAAATTAATGCTTACTGGAGAGTAAAGAAGGAGACAGAGTTAGAACACCTCAGAGCTATGTCCAAACTATCTGAGACTATTCAGGCCCGAAAATTTGAGGATTCAGAGAATTCTCATAAGTCAAGTACCGTGACCTTGGCCAGCATAAAGGAGTCCTTAGGCATGGACGTTGACCAGAAAAGTTTAGAGCAACTTATCAAGAAAAATGGCTGA

Predicted protein sequences of Glyma04g03330

Limit To All Plant Sequences

>Glyma04g03330.1   sequence type=predicted peptide   gene model=Glyma04g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLMAGWDSLILDPESATIERNRSLTKEEINAYWRVKKETELEHLRAMSKLSETIQARKFEDSENSHKSSTVTLASIKESLGMDVDQKSLEQLIKKNGWWTKSSWAFLNEPPVIEAASNKYASQFHVANLGSTKLNPGDGINA*

>Glyma04g03330.2   sequence type=predicted peptide   gene model=Glyma04g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLMAGWDSLILDPESATIERNRSLTKEEINAYWRVKKETELEHLRAMSKLSETIQARKFEDSENSHKSSTVTLASIKESLGMDVDQKSLEQLIKKNGWWTKSSWAFLNEPPVIEAASNKGNSYNQRGISYQPFGVREG*

>Glyma04g03330.3   sequence type=predicted peptide   gene model=Glyma04g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLMAGWDSLILDPESATIERNRSLTKEEINAYWRVKKETELEHLRAMSKLSETIQARKFEDSENSHKSSTVTLASIKESLGMDVDQKSLEQLIKKNG*

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