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Report for Sequence Feature Glyma04g03310

Feature Type:gene_model
Chromosome:Gm04
Start:2439999
stop:2444056
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03310
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19580AT Annotation by Michelle Graham. TAIR10: gamma carbonic anhydrase 1 | chr1:6774937-6777092 FORWARD LENGTH=275 SoyBaseE_val: 2.00E-169ISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005747GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I SoyBaseN/AISS
GO:0031966GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial membrane SoyBaseN/AISS
GO:0045271GO-cc Annotation by Michelle Graham. GO Cellular Compartment: respiratory chain complex I SoyBaseN/AISS
GO:0004089GO-mf Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
PTHR22572Panther SUGAR-1-PHOSPHATE GUANYL TRANSFERASE JGI ISS
PTHR22572:SF47Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_B9R7W9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein yrdA, putative n=1 Tax=Ricinus communis RepID=B9R7W9_RICCO SoyBaseE_val: 3.00E-180ISS
UniRef100_I1JT95UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JT95_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g03310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03310
ParalogEvidenceComments
Glyma06g03380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03310 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g030800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03310
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03310
>Glyma04g03310.3   sequence type=CDS   gene model=Glyma04g03310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACCCTTGGGAGAGCGATCTACAGCGTTGGTAACTGGATTCGAGAAACTGGACAGGCCATTGATCGTCTCGGTTCCCGTCTTCAGGGCGGTTACTACTTCCAAGAGCAGCTCTCTAGGCATCGAACTCTGATGAACATATTTGATAAGGCTCCTGTTGTTGATAAGGATGTATTTGTTGCGCCAAGCGCCTCCGTCATTGGAGACGTTCAACTTGGAAGAGGATCATCCATTTGGTATGGAGTTGTCTTGAGAGGTGATGTTAACAGCATCAGAGTTGGAAATGGAACTAACATTCAGGACAACTCTCTGGTGCATGTTGCAAAGTCAAATTTAAGTGGGAAGGTGTTGCCTACAATTATTGGGGATAATGTTACTGTCGGCCACAGTGCTGTTATCCATGGTTGTACTGTTGAGGACGAGGCTTTTGTTGGTATGGGTGCAATACTACTTGACGGTGTAGTAGTTGAGAAAAATGCCATGGTTGCTGCTGGTGCCCTTGTGAGACAGAATACAAGAATTCCTTCTGGCGAGGTATGGGCAGGCAATCCTGCAAAGTTCCTGAGAAAGCTCACTGACGAAGAGATAGCTTTCATCTCCCAGTCAGCTACCAATTATACTAACCTTGCACAGGTCCATGCGGCCGAAAATTCAAAGTCCTTTGATGAAATTGAGTTTGAGAAGGTGCTACGAAAGAAGTTTGCACGCAAAGATGAGGAGTATGACTCTATGCTGGGTGTTGTGCGTGAGATCCCACCAGAGCTTATTCTTCCTGATAATGTCTTACCTGATAAAGCAGAAAAAGCTCTTAAAAAATCTGGTATTTAA
Predicted protein sequences of Glyma04g03310
>Glyma04g03310.3   sequence type=predicted peptide   gene model=Glyma04g03310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTLGRAIYSVGNWIRETGQAIDRLGSRLQGGYYFQEQLSRHRTLMNIFDKAPVVDKDVFVAPSASVIGDVQLGRGSSIWYGVVLRGDVNSIRVGNGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVIHGCTVEDEAFVGMGAILLDGVVVEKNAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTDEEIAFISQSATNYTNLAQVHAAENSKSFDEIEFEKVLRKKFARKDEEYDSMLGVVREIPPELILPDNVLPDKAEKALKKSGI*






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