SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G19600 | AT | Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein | chr1:6779085-6780898 FORWARD LENGTH=355 | SoyBase | E_val: 0 | ISS |
| GO:0019303 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-ribose catabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| KOG2854 | KOG | Possible pfkB family carbohydrate kinase | JGI | ISS | |
| PTHR10584 | Panther | SUGAR KINASE RELATED | JGI | ISS | |
| PTHR10584:SF26 | Panther | PFKB FAMILY SUGAR KINASE-RELATED | JGI | ISS | |
| PF00294 | PFAM | pfkB family carbohydrate kinase | JGI | ISS | |
| UniRef100_C6TNU7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TNU7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_E4MVN1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-04-I04 n=1 Tax=Eutrema halophilum RepID=E4MVN1_THEHA | SoyBase | E_val: 0 | ISS |
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Glyma04g03290 not represented in the dataset |
Glyma04g03290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g030600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g03290.1 sequence type=CDS gene model=Glyma04g03290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGCGGAGAGGTTTTCCCACGACCATGCTCCCTTGATTCTGGGTCTCCAGCCATCCGCCCTGGTCGACAACGTTGCCACCGTCGATTGGTCCTTGCTCCATCGCATTCCCGGCGAGCGCGGTGGCTCCATCCCTGTCCAAATTGAAGAACTGGAATCCATACTGAGAGAGGTTAAATCCAAATCCCACGATGACATCAAAACTCTCGCTGGTGGCAGCGTTGCCAACACAATTCGCGGTCTCAGTCGCGGTTTTGGAATTTCCACCGGAATTATTGGAGCTTATGGAGATGACCACCAAGGCCAGCTTTTTCTCACCAACATGACCTTCAACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCTCAAATGCTGTCAAAGTTCAGGCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCAATTCATTTAGCCAAACAGGAAGGCCTTCTTGTTTCCTTGGATTTGGCCAGTTTTGAGATGGTGAGGAACTTTAAACTACCGCTTCTCAAGCTACTGGAATCTGGGAACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATACTGCCAATGGGCTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAGCAGGGGACCTTTTTGCAAGTGGATTTTTGTATGGAGTGGTCAAGGGTTTGTCACTAGAAGAATGCTGCAAAGTAGGCACATGCAGTGGTGGATCTGTTATCCGGTCTCTTGGTGGTGAGGTAACGTTGGAGAATTGGCAATGGATGTACAAGCAGATGCAGATAAACGGTCTGCCCACGCCTTCCGGTTTATGCAAATGA
>Glyma04g03290.1 sequence type=predicted peptide gene model=Glyma04g03290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGAERFSHDHAPLILGLQPSALVDNVATVDWSLLHRIPGERGGSIPVQIEELESILREVKSKSHDDIKTLAGGSVANTIRGLSRGFGISTGIIGAYGDDHQGQLFLTNMTFNSVDLSRLRQKKGHTAQCVCLVDDMGNRTMRPCLSNAVKVQAQELVKEDFKGSKWLVLRYAVLNLEVIQAAIHLAKQEGLLVSLDLASFEMVRNFKLPLLKLLESGNIDLCFANEDEAAELLRDEQKDDPIAAVEFLSKYCQWAVVTLGANGCIAKHGKEMIQVPAIGETKATDATGAGDLFASGFLYGVVKGLSLEECCKVGTCSGGSVIRSLGGEVTLENWQWMYKQMQINGLPTPSGLCK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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