Report for Sequence Feature Glyma04g03290
Feature Type: gene_model
Chromosome: Gm04
Start: 2431858
stop: 2434910
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g03290
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G19600 AT
Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein | chr1:6779085-6780898 FORWARD LENGTH=355
SoyBase E_val: 0 ISS
GO:0019303 GO-bp
Annotation by Michelle Graham. GO Biological Process: D-ribose catabolic process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
KOG2854
KOG
Possible pfkB family carbohydrate kinase
JGI ISS
PTHR10584 Panther
SUGAR KINASE RELATED
JGI ISS
PTHR10584:SF26 Panther
PFKB FAMILY SUGAR KINASE-RELATED
JGI ISS
PF00294 PFAM
pfkB family carbohydrate kinase
JGI ISS
UniRef100_C6TNU7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TNU7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_E4MVN1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-04-I04 n=1 Tax=Eutrema halophilum RepID=E4MVN1_THEHA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g03290
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma04g03290 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g030600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g03290
Coding sequences of Glyma04g03290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g03290.1 sequence type=CDS gene model=Glyma04g03290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAGCGGAGAGGTTTTCCCACGACCATGCTCCCTTGATTCTGGGTCTCCAGCCATCCGCCCTGGTCGACAACGTTGCCACCGTCGATTGGTCCTTGCTCCATCGCATTCCCGGCGAGCGCGGTGGCTCCATCCCTGTCCAAATTGAAGAACTGGAATCCATACTGAGAGAGGTTAAATCCAAATCCCACGATGACATCAAAACTCTCGCTGGTGGCAGCGTTGCCAACACAATTCGCGGTCTCAGTCGCGGTTTTGGAATTTCCACCGGAATTATTGGAGCTTATGGAGATGACCACCAAGGCCAGCTTTTTCTCACCAACATGACCTTCAACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCTCAAATGCTGTCAAAGTTCAGGCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCAATTCATTTAGCCAAACAGGAAGGCCTTCTTGTTTCCTTGGATTTGGCCAGTTTTGAGATGGTGAGGAACTTTAAACTACCGCTTCTCAAGCTACTGGAATCTGGGAACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAGCTGAACTTTTAAGGGATGAACAGAAAGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATACTGCCAATGGGCTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAGCAGGGGACCTTTTTGCAAGTGGATTTTTGTATGGAGTGGTCAAGGGTTTGTCACTAGAAGAATGCTGCAAAGTAGGCACATGCAGTGGTGGATCTGTTATCCGGTCTCTTGGTGGTGAGGTAACGTTGGAGAATTGGCAATGGATGTACAAGCAGATGCAGATAAACGGTCTGCCCACGCCTTCCGGTTTATGCAAATGA
Predicted protein sequences of Glyma04g03290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g03290.1 sequence type=predicted peptide gene model=Glyma04g03290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGAERFSHDHAPLILGLQPSALVDNVATVDWSLLHRIPGERGGSIPVQIEELESILREVKSKSHDDIKTLAGGSVANTIRGLSRGFGISTGIIGAYGDDHQGQLFLTNMTFNSVDLSRLRQKKGHTAQCVCLVDDMGNRTMRPCLSNAVKVQAQELVKEDFKGSKWLVLRYAVLNLEVIQAAIHLAKQEGLLVSLDLASFEMVRNFKLPLLKLLESGNIDLCFANEDEAAELLRDEQKDDPIAAVEFLSKYCQWAVVTLGANGCIAKHGKEMIQVPAIGETKATDATGAGDLFASGFLYGVVKGLSLEECCKVGTCSGGSVIRSLGGEVTLENWQWMYKQMQINGLPTPSGLCK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
