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Report for Sequence Feature Glyma04g03276

Feature Type:gene_model
Chromosome:Gm04
Start:2424353
stop:2430980
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03276
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75330AT Annotation by Michelle Graham. TAIR10: ornithine carbamoyltransferase | chr1:28266457-28268383 REVERSE LENGTH=375 SoyBaseE_val: 0ISS
GO:0006164GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process SoyBaseN/AISS
GO:0006520GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0016597GO-mf Annotation by Michelle Graham. GO Molecular Function: amino acid binding SoyBaseN/AISS
GO:0016743GO-mf Annotation by Michelle Graham. GO Molecular Function: carboxyl- or carbamoyltransferase activity SoyBaseN/AISS
KOG1504 KOG Ornithine carbamoyltransferase OTC/ARG3 JGI ISS
PTHR11405Panther CARBAMOYLTRANSFERASE RELATED JGI ISS
PTHR11405:SF1Panther CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN JGI ISS
PF00185PFAM Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JGI ISS
PF02729PFAM Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JGI ISS
UniRef100_I1JT92UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT92_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9SEX4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ornithine carbamoyltransferase n=1 Tax=Canavalia lineata RepID=Q9SEX4_CANLI SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g03276
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g03276 not represented in the dataset
Glyma04g03276 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03276
ParalogEvidenceComments
Glyma06g03361 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03276 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g030500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03276
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03276
>Glyma04g03276.1   sequence type=CDS   gene model=Glyma04g03276   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGATCCCGTGTCACTGTTACCGTACCGTCGGATCAGACAAACCCTACCTCTCCGGTCAGAGTCTCCGCCGTCGCGCTCCTTTCCCCGCCGTCTCTGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACACTATTCTGAAGATGCTGGACCGGGCACTTGAGGTCAAGGCCTTGCTGAAGTCAGGGGACAGGTCGTTTCGACCTTTTGAGGGGAAGACAATGGCAATGATATTTACAAAGCCGTCCATGAGAACGCGTGTTTCGTTCGAGACTGGCTTTACATTGTTAGGTGGCCATGCTATTTATTTAGGACCTGATGATATCCAAATGGGCAAGCGAGAGGAGACTCGTGACATTGCTCGTGTTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGGACATACTTGATCTTGCAAAATATGCAACTGTGCCAGTCATCAATGGGTTGACAGACTACAACCATCCCTGCCAGATAATGGCTGATGCCCTTACCATGGTTGAGCACATTGGTCGGTTTGAAGGTACAAAGGTTGTCTATGTTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATGGCATCTGTAATTCCGTTTCACTTTGTCTGTGCGTGTCCTAAAGGATTTGAACCTGATGCAAAAACAGTTGAGAAGGCAAGGAAAGCTGGAATCAGCAAGATTGAGATAACTAATGATCCCAAAGAGGCTGTTAAAGGAGCTGATGTTGTGTATTCAGATGTCTGGGCCAGCATGGGCCAAAAGGAAGAAGCTGAATACCGGCGCCAAGCTTTTAAAGGATTTCAGGTGAACCAAAATCTTATGGATTTGGCTGGTTCAAAGGCATTTTTCATGCATTGCTTACCGGCGGAAAGAGGGGTGGAGGTGACTGACGAAGTTATTGAAGCTCCAAATTCAATAGTCTTCCCGCAAGCTGAGAACCGAATGCATGCACAGAATGCCGTAATGCTTCATGTACTTGCCAAGTAG
Predicted protein sequences of Glyma04g03276
>Glyma04g03276.1   sequence type=predicted peptide   gene model=Glyma04g03276   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVIPCHCYRTVGSDKPYLSGQSLRRRAPFPAVSVSFRRRISCVASSAIAHKVGLKDFLHLDDFDKDTILKMLDRALEVKALLKSGDRSFRPFEGKTMAMIFTKPSMRTRVSFETGFTLLGGHAIYLGPDDIQMGKREETRDIARVLSRYNDIIMARVFAHKDILDLAKYATVPVINGLTDYNHPCQIMADALTMVEHIGRFEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDAKTVEKARKAGISKIEITNDPKEAVKGADVVYSDVWASMGQKEEAEYRRQAFKGFQVNQNLMDLAGSKAFFMHCLPAERGVEVTDEVIEAPNSIVFPQAENRMHAQNAVMLHVLAK*






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