Report for Sequence Feature Glyma04g03260
Feature Type: gene_model
Chromosome: Gm04
Start: 2403215
stop: 2408690
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g03260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G27680 AT
Annotation by Michelle Graham. TAIR10: ADPGLC-PPase large subunit | chr1:9631630-9634450 FORWARD LENGTH=518
SoyBase E_val: 0 ISS
GO:0009058 GO-bp
Annotation by Michelle Graham. GO Biological Process: biosynthetic process
SoyBase N/A ISS
GO:0019252 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0008878 GO-mf
Annotation by Michelle Graham. GO Molecular Function: glucose-1-phosphate adenylyltransferase activity
SoyBase N/A ISS
GO:0016779 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity
SoyBase N/A ISS
KOG1322
KOG
GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase
JGI ISS
PTHR22572 Panther
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE
JGI ISS
PTHR22572:SF10 Panther
GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE
JGI ISS
PF00483 PFAM
Nucleotidyl transferase
JGI ISS
UniRef100_I3S8A5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Lotus japonicus RepID=I3S8A5_LOTJA
SoyBase E_val: 0 ISS
UniRef100_UPI000170AD44 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000170AD44 related cluster n=1 Tax=unknown RepID=UPI000170AD44
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g03260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g03260
Paralog Evidence Comments
Glyma06g03340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g03260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g030300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g03260
Transcripts of Glyma04g03260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g03260.3 sequence type=transcript gene model=Glyma04g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AACATAACATTGGTAGGATTAGGAACTAGGAAGTGTCAATGTTAGCGAGTAAGTCATAGAAACTTGTAGCCACTGCTGACTCAGTGACAGTTCGAAAGACTTCGCAGGTTTCTCGTGAGTTGTTAACGTTAGAGTTTGTCCCTTGCTATTTGCCACTCAAGTTAAACGCATTCTACCCTCTCCATTACCCACATTTCTCTGTACGTAGTTTCTACCTTCCAGGCCCCACCTTCGTTTTTCTTCTACCAATTCTCCAATTTGAAAAGTGGGTTCTCTGAAAAATCTCGTCTTTTTGGGGCCCTTTTCACTTGAATCTCCCCAGTTATGATTCCTCAACTTATGGTGCAAATTGTCTGAAAAGTTTGGTACTTTATGAAAGTGATTTAGCTCCTTTCTTCACGCATACAAAATACTCACTAGTCCCAATTCCATTGAGCAGAAAGGTATCAAATCCAAAAAGGTTTCTGATTCCGTTGTTGATTCACCAATGGATTCAACTTGTGCAATCCTGAGTGGCCGCAATCTAGCTAAAGTTTGTGAGGGAATTGGAAGAAACAGAAGAAGTGGCTTCTGGGGTGAGAGTACGAGGCGAAGTGTGAACACAAGGTTTTTGAGTGTTCAATCATGGAAGACTTCACGTACCAGTAGGAATCTTAGAAACTCCAAGCCTGGAAGTGGAATTGCACACGCTGTTCTCACATCAGACATTAACGAAGATTCGATGGCATTTCAAGGGGTACCCACTTTTGAAAAACCCGAAGTGGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGACTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCTGCGGTTCCAATTGGCGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAATAGTGGCATCAGAAAAATATTCATTTTGACGCAGTTCAATTCTTTCTCTCTCAACCGCCACCTGTCCCGTGCATACAGCTTCGGAAATGGAATTACTTTTGGAGATGGGTTTGTGGAGGTCTTGGCAGCTACTCAAACACCTGGAGAGGCCGGGAAGAAGTGGTTCCAAGGGACCGCCGATGCTGTAAGACAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGGACTACATGAACTTTGTACAGAGACATGTTGACACAAATGCTGATATCACAGTTTCATGTGTACCCATGGATGACAGTCGGGCATCAGACTATGGACTGATGAAAATTGACAAAACAGGACGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGCGTGTTGACACCACTCTTCTAGGGTTATCGCCACAAGAAGCAGAAAAATATCCTTATATTGCATCCATGGGTGTCTATGTGTTTAGAACTGAAACCCTGCTGCAACTATTAAGATGGAATGGTTCTTCATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAATGAGCACAATGTCCAGGCATATTTATTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTTGCCCTAACAGAACAACCTCCTAAATTTGAATTCTATGATCCAAAGACTCCTTTCTTCACTTCCCCAAGATTCCTACCACCTACCAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATATCTCATGGTTGCTTCTTGAGGGAGTGTAGCATTCAACATTCCATTGTAGGAGTACGCTCACGTTTGGAGTCTGGTGTAGAGCTTCAGGTAAAACATTTTGTGATTTTCTCTAGAGATCATTTTTTGGTTTTTTTTTTCTGAGGGGTATTGCATGATGTCCCATGAAAAGTTTGTGTTCTACATGACTGCAGTAAATTGTACCACCAACCAAAATTGGTAGAGAAGGGGGAAACTGCATTTGCTCACATTTTGCCATGACTTGAGAAATTATTCTTTTTTTTTCAGGAGTTGAGAACATCAACGTATCACCTCAGCTATTATTATTATCAGTCTTCCTATTTCT
>Glyma04g03260.4 sequence type=transcript gene model=Glyma04g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AACATAACATTGGTAGGATTAGGAACTAGGAAGTGTCAATGTTAGCGAGTAAGTCATAGAAACTTGTAGCCACTGCTGACTCAGTGACAGTTCGAAAGACTTCGCAGGTTTCTCGTGAGTTGTTAACGTTAGAGTTTGTCCCTTGCTATTTGCCACTCAAGTTAAACGCATTCTACCCTCTCCATTACCCACATTTCTCTGTACGTAGTTTCTACCTTCCAGGCCCCACCTTCGTTTTTCTTCTACCAATTCTCCAATTTGAAAAGTGGGTTCTCTGAAAAATCTCGTCTTTTTGGGGCCCTTTTCACTTGAATCTCCCCAGTTATGATTCCTCAACTTATGGTGCAAATTGTCTGAAAAGTTTGGTACTTTATGAAAGTGATTTAGCTCCTTTCTTCACGCATACAAAATACTCACTAGTCCCAATTCCATTGAGCAGAAAGGTATCAAATCCAAAAAGGTTTCTGATTCCGTTGTTGATTCACCAATGGATTCAACTTGTGCAATCCTGAGTGGCCGCAATCTAGCTAAAGTTTGTGAGGGAATTGGAAGAAACAGAAGAAGTGGCTTCTGGGGTGAGAGTACGAGGCGAAGTGTGAACACAAGGTTTTTGAGTGTTCAATCATGGAAGACTTCACGTACCAGTAGGAATCTTAGAAACTCCAAGCCTGGAAGTGGAATTGCACACGCTGTTCTCACATCAGACATTAACGAAGATTCGATGGCATTTCAAGGGGTACCCACTTTTGAAAAACCCGAAGTGGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGACTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCTGCGGTTCCAATTGGCGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAATAGTGGCATCAGAAAAATATTCATTTTGACGCAGTTCAATTCTTTCTCTCTCAACCGCCACCTGTCCCGTGCATACAGCTTCGGAAATGGAATTACTTTTGGAGATGGGTTTGTGGAGGTCTTGGCAGCTACTCAAACACCTGGAGAGGCCGGGAAGAAGTGGTTCCAAGGGACCGCCGATGCTGTAAGACAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGGACTACATGAACTTTGTACAGAGACATGTTGACACAAATGCTGATATCACAGTTTCATGTGTACCCATGGATGACAGTCGGGCATCAGACTATGGACTGATGAAAATTGACAAAACAGGACGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGCGTGTTGACACCACTCTTCTAGGGTTATCGCCACAAGAAGCAGAAAAATATCCTTATATTGCATCCATGGGTGTCTATGTGTTTAGAACTGAAACCCTGCTGCAACTATTAAGATGGAATGGTTCTTCATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAATGAGCACAATGTCCAGGCATATTTATTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTTGCCCTAACAGAACAAGTTTGTTTAACTATCCTATAATTTTTATTAATTTATTTGGGTTCATATGATGAGCATCAAAGTACTAGCAAAACCACCCTCTCTAAAAAACTGGCAATTAAGGGGGAGAACAAAG
Coding sequences of Glyma04g03260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g03260.2 sequence type=CDS gene model=Glyma04g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCAACTTGTGCAATCCTGAGTGGCCGCAATCTAGCTAAAGTTTGTGAGGGAATTGGAAGAAACAGAAGAAGTGGCTTCTGGGGTGAGAGTACGAGGCGAAGTGTGAACACAAGGTTTTTGAGTGTTCAATCATGGAAGACTTCACGTACCAGTAGGAATCTTAGAAACTCCAAGCCTGGAAGTGGAATTGCACACGCTGTTCTCACATCAGACATTAACGAAGATTCGATGGCATTTCAAGGGGTACCCACTTTTGAAAAACCCGAAGTGGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGACTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCTGCGGTTCCAATTGGCGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAATAGTGGCATCAGAAAAATATTCATTTTGACGCAGTTCAATTCTTTCTCTCTCAACCGCCACCTGTCCCGTGCATACAGCTTCGGAAATGGAATTACTTTTGGAGATGGGTTTGTGGAGGTCTTGGCAGCTACTCAAACACCTGGAGAGGCCGGGAAGAAGTGGTTCCAAGGGACCGCCGATGCTGTAAGACAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGGACTACATGAACTTTGTACAGAGACATGTTGACACAAATGCTGATATCACAGTTTCATGTGTACCCATGGATGACAGTCGGGCATCAGACTATGGACTGATGAAAATTGACAAAACAGGACGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGCGTGTTGACACCACTCTTCTAGGGTTATCGCCACAAGAAGCAGAAAAATATCCTTATATTGCATCCATGGGTGTCTATGTGTTTAGAACTGAAACCCTGCTGCAACTATTAAGATGGAATGGTTCTTCATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAATGAGCACAATGTCCAGGCATATTTATTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTTGCCCTAACAGAACAACCTCCTAAATTTGAATTCTATGATCCAAAGACTCCTTTCTTCACTTCCCCAAGATTCCTACCACCTACCAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATATCTCATGGTTGCTTCTTGAGGGAGTGTAGCATTCAACATTCCATTGTAGGAGTACGCTCACGTTTGGAGTCTGGTGTAGAGCTTCAGGATACGATGATGATGGGTGCCGACTACTATCAAACTGAGTATGAAATTGCATCTCTGCTGGCAGAAGGGAAGGTTCCAATTGGTGTTGGGGAAAATACTAAAATTAGGAATTGCATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGGTCATAGAAAACATCGATGGTGTTCAAGAAGCTGACAGGGCAAAGGAAGGATTCTACATTAGATCGGGCATCACAATTACATTAAAAAATGCAACAATTAAAGATGGAACAGTTATATGA
>Glyma04g03260.3 sequence type=CDS gene model=Glyma04g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCAACTTGTGCAATCCTGAGTGGCCGCAATCTAGCTAAAGTTTGTGAGGGAATTGGAAGAAACAGAAGAAGTGGCTTCTGGGGTGAGAGTACGAGGCGAAGTGTGAACACAAGGTTTTTGAGTGTTCAATCATGGAAGACTTCACGTACCAGTAGGAATCTTAGAAACTCCAAGCCTGGAAGTGGAATTGCACACGCTGTTCTCACATCAGACATTAACGAAGATTCGATGGCATTTCAAGGGGTACCCACTTTTGAAAAACCCGAAGTGGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGACTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCTGCGGTTCCAATTGGCGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAATAGTGGCATCAGAAAAATATTCATTTTGACGCAGTTCAATTCTTTCTCTCTCAACCGCCACCTGTCCCGTGCATACAGCTTCGGAAATGGAATTACTTTTGGAGATGGGTTTGTGGAGGTCTTGGCAGCTACTCAAACACCTGGAGAGGCCGGGAAGAAGTGGTTCCAAGGGACCGCCGATGCTGTAAGACAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGGACTACATGAACTTTGTACAGAGACATGTTGACACAAATGCTGATATCACAGTTTCATGTGTACCCATGGATGACAGTCGGGCATCAGACTATGGACTGATGAAAATTGACAAAACAGGACGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGCGTGTTGACACCACTCTTCTAGGGTTATCGCCACAAGAAGCAGAAAAATATCCTTATATTGCATCCATGGGTGTCTATGTGTTTAGAACTGAAACCCTGCTGCAACTATTAAGATGGAATGGTTCTTCATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAATGAGCACAATGTCCAGGCATATTTATTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTTGCCCTAACAGAACAACCTCCTAAATTTGAATTCTATGATCCAAAGACTCCTTTCTTCACTTCCCCAAGATTCCTACCACCTACCAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATATCTCATGGTTGCTTCTTGAGGGAGTGTAGCATTCAACATTCCATTGTAGGAGTACGCTCACGTTTGGAGTCTGGTGTAGAGCTTCAGGTAAAACATTTTGTGATTTTCTCTAGAGATCATTTTTTGGTTTTTTTTTTCTGA
>Glyma04g03260.4 sequence type=CDS gene model=Glyma04g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCAACTTGTGCAATCCTGAGTGGCCGCAATCTAGCTAAAGTTTGTGAGGGAATTGGAAGAAACAGAAGAAGTGGCTTCTGGGGTGAGAGTACGAGGCGAAGTGTGAACACAAGGTTTTTGAGTGTTCAATCATGGAAGACTTCACGTACCAGTAGGAATCTTAGAAACTCCAAGCCTGGAAGTGGAATTGCACACGCTGTTCTCACATCAGACATTAACGAAGATTCGATGGCATTTCAAGGGGTACCCACTTTTGAAAAACCCGAAGTGGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGACTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCTGCGGTTCCAATTGGCGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAATAGTGGCATCAGAAAAATATTCATTTTGACGCAGTTCAATTCTTTCTCTCTCAACCGCCACCTGTCCCGTGCATACAGCTTCGGAAATGGAATTACTTTTGGAGATGGGTTTGTGGAGGTCTTGGCAGCTACTCAAACACCTGGAGAGGCCGGGAAGAAGTGGTTCCAAGGGACCGCCGATGCTGTAAGACAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGGACTACATGAACTTTGTACAGAGACATGTTGACACAAATGCTGATATCACAGTTTCATGTGTACCCATGGATGACAGTCGGGCATCAGACTATGGACTGATGAAAATTGACAAAACAGGACGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGCGTGTTGACACCACTCTTCTAGGGTTATCGCCACAAGAAGCAGAAAAATATCCTTATATTGCATCCATGGGTGTCTATGTGTTTAGAACTGAAACCCTGCTGCAACTATTAAGATGGAATGGTTCTTCATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAATGAGCACAATGTCCAGGCATATTTATTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTTGCCCTAACAGAACAAGTTTGTTTAACTATCCTATAA
Predicted protein sequences of Glyma04g03260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g03260.2 sequence type=predicted peptide gene model=Glyma04g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSTCAILSGRNLAKVCEGIGRNRRSGFWGESTRRSVNTRFLSVQSWKTSRTSRNLRNSKPGSGIAHAVLTSDINEDSMAFQGVPTFEKPEVDPKSVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRAYSFGNGITFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMNFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDKTGRIIQFAEKPKGSDLKAMRVDTTLLGLSPQEAEKYPYIASMGVYVFRTETLLQLLRWNGSSCNDFGSEIIPSAVNEHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSIQHSIVGVRSRLESGVELQDTMMMGADYYQTEYEIASLLAEGKVPIGVGENTKIRNCIIDKNAKIGRNVVIENIDGVQEADRAKEGFYIRSGITITLKNATIKDGTVI*
>Glyma04g03260.3 sequence type=predicted peptide gene model=Glyma04g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSTCAILSGRNLAKVCEGIGRNRRSGFWGESTRRSVNTRFLSVQSWKTSRTSRNLRNSKPGSGIAHAVLTSDINEDSMAFQGVPTFEKPEVDPKSVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRAYSFGNGITFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMNFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDKTGRIIQFAEKPKGSDLKAMRVDTTLLGLSPQEAEKYPYIASMGVYVFRTETLLQLLRWNGSSCNDFGSEIIPSAVNEHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSIQHSIVGVRSRLESGVELQVKHFVIFSRDHFLVFFF*
>Glyma04g03260.4 sequence type=predicted peptide gene model=Glyma04g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSTCAILSGRNLAKVCEGIGRNRRSGFWGESTRRSVNTRFLSVQSWKTSRTSRNLRNSKPGSGIAHAVLTSDINEDSMAFQGVPTFEKPEVDPKSVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRAYSFGNGITFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMNFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDKTGRIIQFAEKPKGSDLKAMRVDTTLLGLSPQEAEKYPYIASMGVYVFRTETLLQLLRWNGSSCNDFGSEIIPSAVNEHNVQAYLFNDYWEDIGTIKSFFDANLALTEQVCLTIL*