Glyma04g03250 - SoyBase

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Report for Sequence Feature Glyma04g03250

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2381894
stop:	2385668
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19630	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 722, subfamily A, polypeptide 1 \| chr1:6785427-6787967 REVERSE LENGTH=476	SoyBase	E_val: 1.00E-179	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0157	KOG	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies	JGI		ISS
PTHR24286	Panther	FAMILY NOT NAMED	JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_B9R7Y0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9R7Y0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A996	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A996 related cluster n=1 Tax=unknown RepID=UPI000233A996	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03250

Paralog	Evidence	Comments
Glyma06g03320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g03250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03250

Limit To All Plant Sequences

>Glyma04g03250.1   sequence type=CDS   gene model=Glyma04g03250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTCCCACTTGGTAAAGGAGCATCCTTATTACATAATTTGTTGCTATGTTGGTCTCTTGTTGTTGTTCTTATTAGTATGTTGGGCACTTTGGTGCAAAAACAAGTCCTCTATCGGCATTCCTCCGGGAAATCGAGGATTGCCCTTCGTAGGAGAGACACTTCAGTTCATGGCTGCCATCAACAGCAGCAAAGGAGTCTATGAGTTTGTCCATGCTCGCCGCCTCCGGTATGGAAAATGCTTCAAGGCGAAGTTGTTTGGGGAGACGCACGTTTTTATATCGAGCAGGGAGTCAGCAAAAGTGATTGTAAACAAGGAGAACGAGGGAGGGAAATTCTCAAAGAGCTACATAAAATCAATCGCAGAGCTGCTTGGGCGCGACAGCTTGCTCTGTGCAGCACAACAGCATCACAAACTCATACGCGCCCGTCTCTTCAGTTTGTTCTCAACAGATTCTTTGTCTTCCTTCGTTCAACTCTTTGATTCACTCGTTCTTCAAGCTACACGTACCTGGACCTGTGGATCTGTTGTCGTCATACAAGATGAAACACTCAAGCTGGCCTGTAAGGCGATGTGCAAGATGCTAATAAGCATCGAGAGTGGCCAAGAATTAGTGACGATGCATAATGAGGTTGCTCGTTTGTGTGAAGCAATGCTAGCATTACCCGTGAGGTTACCCTGGACCAGATTCTACAAAGGCCTTCAGGCTCGAAAAAGAATAATGAACATATTGGAGAAGAATATAAGTGAAAGAAGAAGTGGAATTGCAACTCACCATGTAGATTTTCTTCAACAACTTTGGGATAATAAGTTAAACCGAGGATGGAGACAGGACACGATTGCAAATGCAATGACATGGATGATCAAATTTGTGGATGAGAATCGACAAGTTTTTAATACTCTTATGAAGGAGCAACTTAAGATTGAGAAGAATGGCTCAAGAAATTCGTATCTTACACTAGAGGCCCTTAATGAGATGCCATATGCTTCTAAGGTTGTAAAAGAAGCGTTGAGGAAGGCATCTGTGGTACAGTGGTTGCCCAGAGTAGCACTCGAGGACTGTGTGATTGAAGGATTTAAAATCAAGAAAGGGTGGAACATTAACATCGATGCTAGATCGATACACCATGATCCAACTGTGCACAAGGATCCGGATGTGTTCAATCCTTCAAGATTTCCAGCAGAGTCAAAACCATACAGCTTCTTAGCTTTTGGGATGGGAGGAAGGACGTGCCTAGGGAAGAACATGGCTAAAGCCATGATGTTGGTGTTTCTCCACCGCTTCATCACCAATTACAAGTGGAAGGTGATTGATTCTGACTCAAGTATTCAGAAACGAGCGCTTTTTACAAAACTTAAGAGTGGTTATCCTATAAAGATTTACATTTCCCAGCAATTGGAATGA

Predicted protein sequences of Glyma04g03250

Limit To All Plant Sequences

>Glyma04g03250.1   sequence type=predicted peptide   gene model=Glyma04g03250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSHLVKEHPYYIICCYVGLLLLFLLVCWALWCKNKSSIGIPPGNRGLPFVGETLQFMAAINSSKGVYEFVHARRLRYGKCFKAKLFGETHVFISSRESAKVIVNKENEGGKFSKSYIKSIAELLGRDSLLCAAQQHHKLIRARLFSLFSTDSLSSFVQLFDSLVLQATRTWTCGSVVVIQDETLKLACKAMCKMLISIESGQELVTMHNEVARLCEAMLALPVRLPWTRFYKGLQARKRIMNILEKNISERRSGIATHHVDFLQQLWDNKLNRGWRQDTIANAMTWMIKFVDENRQVFNTLMKEQLKIEKNGSRNSYLTLEALNEMPYASKVVKEALRKASVVQWLPRVALEDCVIEGFKIKKGWNINIDARSIHHDPTVHKDPDVFNPSRFPAESKPYSFLAFGMGGRTCLGKNMAKAMMLVFLHRFITNYKWKVIDSDSSIQKRALFTKLKSGYPIKIYISQQLE*

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