Glyma04g03240 - SoyBase

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Report for Sequence Feature Glyma04g03240

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2371109
stop:	2378536
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22100	AT	Annotation by Michelle Graham. TAIR10: Inositol-pentakisphosphate 2-kinase family protein \| chr1:7798023-7800030 REVERSE LENGTH=441	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0035299	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inositol pentakisphosphate 2-kinase activity	SoyBase	N/A	ISS
KOG4749	KOG	Inositol polyphosphate kinase	JGI		ISS
PTHR14456	Panther	INOSITOL POLYPHOSPHATE KINASE 1	JGI		ISS
PTHR14456:SF6	Panther	gb def: Hypothetical protein MJB21.19	JGI		ISS
PF06090	PFAM	Inositol-pentakisphosphate 2-kinase	JGI		ISS
UniRef100_A7X641	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inositol pentakisphosphate 2-kinase n=1 Tax=Glycine max RepID=A7X641_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JT87	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT87_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03240

Paralog	Evidence	Comments
Glyma06g03310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g030000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03240

Limit To All Plant Sequences

>Glyma04g03240.1   sequence type=CDS   gene model=Glyma04g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTAATTTTAAGGGAGAAGGACGCAGGTGAGTGGGTTTACCGAGGCGAAGGAGCTGCCAATCTTGTTCTCGCATACACCGGATCATCTCCTACGTTTATTGGGAAAGTGATGCGCATTCGTAAGTGTCCAAGGAATGGCGCAGAGGGTATGTGTATGAGGAGCCCCTCTGCTTTGACTGCGCACGAGCGCCTCCTCTGGAAAGACGTTGATGAACTCATTTCATCTTTGGACAATGAAATTGCATGCCAACTATTTTCCCACCACGTTATGAAGCCATTGCTTGGTCCCAAATATATTGATGCTGGGATGCTTGTTGGGGTGTCAAGGGAATTTCTCGAATTGGTTGAAAAGAATGTAATTCGTCAACGTCCTGCTTGGAGAGTTGATAATGCTCAGGTCGACATGCATCGTGATTCTGTGCTTCTCATGTCTGATCACTCACTCTTCACTCATGGTAATCTAGTATCTATCCCCTGCATATCTGTTGAGATAAAGCCCAAATGTGGATTTATTCCTCTTTCAAGATTCATATCTGAAGGAACTGCTATCAAAAGGAGGATAACTCGCTTTCAAATGCACCAAGCTCTGAAATTGCATCAAGGAGAGATATCACTGCTAAGTGAATACAATCCTCTTGATCTGTTCTCTGGATCAAAGGAAAGAATTTATAAAGCTATCAAGGATCTCTTCACTACACCTCAAAACAATTTTCGTGTATTTATGAATGGCTCTCTCATATTTGGTGGTCTGGGAGGTGGTGCAGAAGATACAAACTTTGGTATTGCTAAAGCATTTGAAGATGCACTTAAGTCTGTCATTCAAGCTGATAATGGTCTGTGTACAGAGAACTTGCTTACTATTGTTGCTGAGGCTGTGCAAAAATCGGGAGTCCTTGATCGACTCCTGGATGTTCAGAAGCTTGATAATGTTGACATAGAAGGAGCCATCCATGCTTATTATGACATTACTCATCAACAGTGCATGATATGTAGAGAATTGAGTGAAGAGCAACTGAAAAGATATACCTCTTTGCATTCTGCTACATTGGATGAAAGCTTGAGAATTGTAAAGGACTACTTAATAGCAGCAACTGCAAAAGACTGCAGTTTTATGATATGTTTTAGACCAAGGAAAGCGGGGGATTCTGGATCTGGATCTATATACAGTAACATATATCTTGAGTCAACTAAGCAAACCTTTGACTTCAAGGTGTATTTCATTGACTTGGATTTGAAGCGAATGAGTAAAATGGAAGAATATTATGAATTAGATAAGAAGATAGTGAGCTGCTACAAAGAAATGATCAAAATGGACCAGGGAAGAAACCCACAAACTTGCAATCCTCTTAAACTGCATACTGAGATTTAG

Predicted protein sequences of Glyma04g03240

Limit To All Plant Sequences

>Glyma04g03240.1   sequence type=predicted peptide   gene model=Glyma04g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVILREKDAGEWVYRGEGAANLVLAYTGSSPTFIGKVMRIRKCPRNGAEGMCMRSPSALTAHERLLWKDVDELISSLDNEIACQLFSHHVMKPLLGPKYIDAGMLVGVSREFLELVEKNVIRQRPAWRVDNAQVDMHRDSVLLMSDHSLFTHGNLVSIPCISVEIKPKCGFIPLSRFISEGTAIKRRITRFQMHQALKLHQGEISLLSEYNPLDLFSGSKERIYKAIKDLFTTPQNNFRVFMNGSLIFGGLGGGAEDTNFGIAKAFEDALKSVIQADNGLCTENLLTIVAEAVQKSGVLDRLLDVQKLDNVDIEGAIHAYYDITHQQCMICRELSEEQLKRYTSLHSATLDESLRIVKDYLIAATAKDCSFMICFRPRKAGDSGSGSIYSNIYLESTKQTFDFKVYFIDLDLKRMSKMEEYYELDKKIVSCYKEMIKMDQGRNPQTCNPLKLHTEI*

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