Report for Sequence Feature Glyma04g03230
Feature Type: gene_model
Chromosome: Gm04
Start: 2366242
stop: 2370703
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g03230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G39170 AT
Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr4:18240887-18243621 FORWARD LENGTH=614
SoyBase E_val: 0 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0008526 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol transporter activity
SoyBase N/A ISS
KOG1471
KOG
Phosphatidylinositol transfer protein SEC14 and related proteins
JGI ISS
PTHR23324 Panther
SEC14 RELATED PROTEIN
JGI ISS
PTHR23324:SF5 Panther
SEC14 CYTOSOLIC FACTOR-RELATED
JGI ISS
PF00650 PFAM
CRAL/TRIO domain
JGI ISS
PF03765 PFAM
CRAL/TRIO, N-terminus
JGI ISS
UniRef100_B9RH84 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol transporter, putative n=1 Tax=Ricinus communis RepID=B9RH84_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233A995 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A995 related cluster n=1 Tax=unknown RepID=UPI000233A995
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g03230
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g03230
Paralog Evidence Comments
Glyma06g03300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g03230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g029900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g03230
Coding sequences of Glyma04g03230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g03230.2 sequence type=CDS gene model=Glyma04g03230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAACCAATCTCTGCTTTGAAGGAATGGATGACAGGCGAGAGAGGAAATTGAGTTTTGAGAATAATTCCGAGGATGATAGATGGGCAAAAATTGGTAGTCTGAAAAAGAAAGCATTATACGCGTCCGCCAAATTTAGACACTCTTTCAAGAAGAAAAGAAGCAGAAAAATTGATAGCAGGAGCAATTCCCTCTCCATTGAGGATGTTCGGGATGTTAAAGACATTCAAGCAGTGGATGCATTTCGACAGGCACTTGTGTTAGATAACTTGCTTACTCCAATACATGATGACTATCATATGCTATTGAGATTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATCTGGGCCAATATGATCCAATGGAGGAAAGAATATGGTACAGATACAATTATGGAGGATTTTGAATTCAAGGAGTTGAATGAAGTCCTAAAGTACTACCCGCATGGTAATCATGGTGTAGATAGGGAAGGAAGGCCTGTTTATATTGAGAGGCTAGGGAAAGTTGATCCCAACAAGCTTATGCAAGTAACTACCTTGGAAAGGTATTTGAGATACCATGTGCAGGGTTTTGAGAAAACATTTGCTGTTAAGTTTCCGGCTTGCTCTATAGCTGCGAAGAGACACATAGATTCAAGTACAACCATTTTGGATGTTCAAGGTGTGGGCTTCAAAAACCTAACAAAGTCTGCACGGGAACTCATCACCCGGCTGCAGAAGATTGATGGTGATTACTACCCTGAAACACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATACTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATGTTCTTGGAAACAAGTTCCAGAGTAAACTGCTTGAGATTATAGATGAGAGTGAGCTGCCAGAATTTCTTGGTGGCAGTTGCACTTGTGTAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGACCCAAACATTTTAAAGATGGTTCTTAGTGGTGAAGTGGGATGTTCTAAACAAATAGTAACAGTTTCTAACGACGAGGGGAGGGTGATTGAATGTGACAAGATATCTTTTCCAATGATTAGAGGTAGCGATACATCTACAGGAGAATCAGGATCTGAAGTTGAAGATATAGCTTCTCCCAAAGCATGTGGGAATTGTATAAGCCCTATGTTAACTCCTGTCCTTGAAGAAGCAAGAATGGTTGGTAAGACTAGTCATGCTGGCAATTTAGTTGAGCATGTTCCCACGGTTGACAAAGCCATTGATGTTGGACCAAAGGAAAAACAAGCAACACCTCGAATGTTATTTTGTTCAACAGCGGGTTTCATTTTGGCCCTTTATACTTTTGCTCGATCAATAGCATTTCGTGTCACTAAGGGAATACGGTACTCAGATTCTGATTCTGCCAGAAATATACTTAACATGACTGTTGATTCAATATCCATGGAGGAATCTCGTCCTGATTCATGTGCTCCCGGCAGATTCACAAAGACAAACATTCCCTCGTCTACCTTAAAACGCATTGGTGAGCTTGAAGAGAAAGTTGACATGCTGCAATCAAAGCCTAGTGTGATGCCACATGAGAAAGAGGAGCTGCTCGATGCTGCTGTTTATCGTGTGGATGCATTGGAAGCAGAGTTGATAGCTACAAAGAAGGCTTTATACGAATCTTTGATAAGACAAGAAGAACTTATGGCATACATAGACAGTCAGGAAAGAGACAAATTCAAGAGAAAGGGTTGCTGGTGA
Predicted protein sequences of Glyma04g03230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g03230.2 sequence type=predicted peptide gene model=Glyma04g03230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSTNLCFEGMDDRRERKLSFENNSEDDRWAKIGSLKKKALYASAKFRHSFKKKRSRKIDSRSNSLSIEDVRDVKDIQAVDAFRQALVLDNLLTPIHDDYHMLLRFLKARKFDIEKAKHIWANMIQWRKEYGTDTIMEDFEFKELNEVLKYYPHGNHGVDREGRPVYIERLGKVDPNKLMQVTTLERYLRYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVQGVGFKNLTKSARELITRLQKIDGDYYPETLCQMFIINAGPGFKILWNTVKTFLDPKTTSKIHVLGNKFQSKLLEIIDESELPEFLGGSCTCVDQGGCMRSDKGPWQDPNILKMVLSGEVGCSKQIVTVSNDEGRVIECDKISFPMIRGSDTSTGESGSEVEDIASPKACGNCISPMLTPVLEEARMVGKTSHAGNLVEHVPTVDKAIDVGPKEKQATPRMLFCSTAGFILALYTFARSIAFRVTKGIRYSDSDSARNILNMTVDSISMEESRPDSCAPGRFTKTNIPSSTLKRIGELEEKVDMLQSKPSVMPHEKEELLDAAVYRVDALEAELIATKKALYESLIRQEELMAYIDSQERDKFKRKGCW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
