Glyma04g03220 - SoyBase

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Report for Sequence Feature Glyma04g03220

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2352619
stop:	2358291
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24550	AT	Annotation by Michelle Graham. TAIR10: Clathrin adaptor complexes medium subunit family protein \| chr4:12675873-12678903 FORWARD LENGTH=451	SoyBase	E_val: 0	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0030125	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin vesicle coat	SoyBase	N/A	ISS
KOG0937	KOG	Adaptor complexes medium subunit family	JGI		ISS
PTHR11998	Panther	CLATHRIN COAT ASSEMBLY PROTEIN	JGI		ISS
PTHR11998:SF13	Panther	CLATHRIN COAT ASSEMBLY PROTEIN AP50	JGI		ISS
PF00928	PFAM	Adaptor complexes medium subunit family	JGI		ISS
PF01217	PFAM	Clathrin adaptor complex small chain	JGI		ISS
UniRef100_I1JT85	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT85_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SB50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP-4 complex subunit mu-1 n=1 Tax=Arabidopsis thaliana RepID=Q9SB50_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03220

Paralog	Evidence	Comments
Glyma06g03280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g029800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03220

Limit To All Plant Sequences

>Glyma04g03220.1   sequence type=CDS   gene model=Glyma04g03220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATATTGCAGTTCTTCGTGCTTTCACAGAGAGGCGATAACATCGTCTACCGCGACTATCGTGGTGAAGCTCAAAAAGGAAGCGCTGAGACATTTTTCCGAAAAGTAAAGTTCTGGAAAGAAGATGCTGAGGGAGATGCTCCACCTGTTTTTAATATAGACGGTGTGAACTACTTCCACGTAAAGGTTGCTGGATTGCTATTTGTTGCTACTACTAGAGTCAATGTCTCCCCTTCTCTTGTTTTGGAACTTTTACAAAGAATTGCACGTGTCATCAAAGATTACCTTGGTGTTCTCAATGAAGATTCCTTTAGAAAGAACTTCGTGCTCGTTTATGAATTACTGGATGAAGTCATTGATTTTGGTTATGTGCAAACAACATCCACTGAGGATTTGAAGTCATATGTTTTCAATGAGCCAATAGTGATTGATGCTGCACGGATGCCTCCACTTGGCCCTGCTTCCATTTTTATGCAAGGGACCAAACGAATGCCAGGTACAGCTATTACAAAGTCTGTGGTTGCTAATGAACCCGGTGGAAGGAAGAGGGATGAGATCTTTGTTGATGTAATTGAGAAAATAAGTGTTACATTCAACTCTAGTGGATTTATACTTACTAGTGAGATAGATGGAACCATTCAAATGAAGAGTTATCTTACTGGTAACCCAGAGATTCGACTTGCTCTCAACGAGGACCTGAGTATAGGAACAAGTGATTATAGAGGTTCAGGTGCTGTCATTTTAGATGATTGTAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATGTTGATAGAACTTTGTCATTGGTACCACCAGAAGGTGAATTTCCAGTCATGAATTATCGTATGACTCAACCATTTAAGCCACCCTTTCGTATTAATGCATTAATTGAAGAAACAGGATCCCTAAAGGCTGAAGTGACCATTAAAGTGCGAGCTGAATTCAACTCAAGTATCAATGCTAATACTGTTCTTGTGCAGATGCCTCTGCCATCATTTACATCTCGTGTTACTTTTGAGTTAGAACCTGGAGCAGTTGGACACACCACTGATTTTAAGGAAGCAAATAAAAGACTGGAATGGGGTCTGAAAAAGGTTGTTGGTGGATCTGAACATACTTTACGAGCAAAGCTGACATTTTCACAGGAGTTACATGGAAATATCATGAAAGAAGCAGGGCCTGTCAGCATGACTTTCACCGTACCTATGTACAATGCTTCAAGGCTTCAGGTGAAGTATTTGCAAATAGCAAAGAAATCAAAAGCACATAATCCTTATCGCTGGGTTAGATATGTAACCCAAGCAAACTCATACGTAGCACGGTTATAA

Predicted protein sequences of Glyma04g03220

Limit To All Plant Sequences

>Glyma04g03220.1   sequence type=predicted peptide   gene model=Glyma04g03220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILQFFVLSQRGDNIVYRDYRGEAQKGSAETFFRKVKFWKEDAEGDAPPVFNIDGVNYFHVKVAGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYVQTTSTEDLKSYVFNEPIVIDAARMPPLGPASIFMQGTKRMPGTAITKSVVANEPGGRKRDEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSDYRGSGAVILDDCNFHESVHLDSFDVDRTLSLVPPEGEFPVMNYRMTQPFKPPFRINALIEETGSLKAEVTIKVRAEFNSSINANTVLVQMPLPSFTSRVTFELEPGAVGHTTDFKEANKRLEWGLKKVVGGSEHTLRAKLTFSQELHGNIMKEAGPVSMTFTVPMYNASRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL*

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