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Report for Sequence Feature Glyma04g03180

Feature Type:gene_model
Chromosome:Gm04
Start:2320692
stop:2324583
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03180
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G45000AT Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein | chr1:17009220-17011607 FORWARD LENGTH=399 SoyBaseE_val: 0ISS
GO:0030163GO-bp Annotation by Michelle Graham. GO Biological Process: protein catabolic process SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG0651 KOG 26S proteasome regulatory complex, ATPase RPT4 JGI ISS
PTHR23073Panther 26S PROTEASE REGULATORY SUBUNIT JGI ISS
PTHR23073:SF10Panther 26S PROTEASE REGULATORY SUBUNIT S10B JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
UniRef100_B9R7Z7UniRef Annotation by Michelle Graham. Most informative UniRef hit: 26S protease regulatory subunit S10b, putative n=2 Tax=fabids RepID=B9R7Z7_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000189D0C4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D0C4 related cluster n=1 Tax=unknown RepID=UPI000189D0C4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g03180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03180
ParalogEvidenceComments
Glyma06g03230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03180 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g029400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03180
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03180
>Glyma04g03180.1   sequence type=CDS   gene model=Glyma04g03180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAGCAGAGGATGCCGTAAGACGCCGTAATGCGGTCGCCGAGTATCGGAAGAAACTTCTCCAGCACAAGGAATTGGAATCCAGAGTCCGATCCGTCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATGATTTGAAATCTCTTCAAAGTGTTGGGCAGATTATTGGCGAAGTTCTCAGGCCTCTTGACAATGAACGCCTGATTGTTAAAGCAAGCAGTGGTCCCAGGTATGTGGTTGGTTGCCGCAGTAAAGTGGATAAGGAAAAATTGACTTCAGGGACAAGGGTGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCTCGAGAAGTTGATCCAGTAGTTTACAATATGTTGCATGAAGATCCTGGTAATATCAGCTACTCAGCTGTTGGTGGCTTATCTGATCAGATCAGGGAATTGAGGGAGTCAATTGAACTGCCTCTAATGAATCCTGAGCTCTTCCTTCGAGTTGGAATTAAACCTCCAAAGGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAGGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATCAGAGAGATGTTTGGTTATGCACGTGATCACCAGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGAGGTCGCCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACGCTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTTGGAAAGGTTAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTCCTGCGTCCTGGGAGATTGGATAGAAAAATAGAAATCCCTCTGCCTAATGAACAATCAAGGATGGAAATTCTTAAGATTCATGCTGCTGGTATCGCTAAGCATGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGGATTTAATGGGGCTGATCTTCGAAATGTCTGCACAGAAGCTGGAATGGCAGCAATTCGTGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGGCTGTTAGGAAACTGAACGAGGCAAAGAAACTTGAATCCAGTGCGCACTACAGTGCTGATTTTGGTAAAGACTAG
Predicted protein sequences of Glyma04g03180
>Glyma04g03180.1   sequence type=predicted peptide   gene model=Glyma04g03180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEAEDAVRRRNAVAEYRKKLLQHKELESRVRSVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYSADFGKD*






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