Glyma04g03170 - SoyBase

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Report for Sequence Feature Glyma04g03170

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2314130
stop:	2318526
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75420	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr1:28305469-28307317 FORWARD LENGTH=463	SoyBase	E_val: 0	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG0853	KOG	Glycosyltransferase	JGI		ISS
PTHR12526	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PTHR12526:SF41	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PF00534	PFAM	Glycosyl transferases group 1	JGI		ISS
UniRef100_B9R7Z9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9R7Z9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JT81	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT81_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03170

Paralog	Evidence	Comments
Glyma06g03220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g029300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03170

Limit To All Plant Sequences

>Glyma04g03170.1   sequence type=CDS   gene model=Glyma04g03170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGCATTCGGTGGCAATGGCGAAGAAGCGGTGGCTGATAATGTTGGCGGCATTCCTGTCCGTCTCAACAGTGACGGTGCTCTTAATGAGATCCAACAACTCCGATTCCTGCAACACCAACCATTTTACTATTGCACAAGATAATAACCAGATTCGTTCCCCTGTCCAACTCACTAATGCCGCTTCCAGCCCCCTTAATTTCATGAAGTCCAAGCTAGTTCTCATGGTTTCGCACGAGCTTTCTCTTTCAGGAGGGCCTTTGCTTCTGATGGAGTTGGCGTTTCTGTTGAGAGGCGTTGGTTCCGATGTCGTTTGGATCACTAATCAGAAACCTTCGGAACATGATCAGGTTATTTACAGTTTGGAAAGCAAGATGTTAGACAGAGGAGTGCAGGTCCTGTCTGCCAAAGGTGAAAAGGCTATAGATACAGCTCTCAAAGCAGATATGGTCATTCTAAATACTGCTGTAGCTGGGAAGTGGCTGGATGCCGTTCTCAAGGAAAAAGTTGCCCATGTTCTTCCAAAGGTTTTATGGTGGATTCATGAAATGCGAGGGCATTATTTCAAAGTGGAATATGTTAAGCACCTCCCTTTTGTTGCAGGTGCCATGATTGATTCACATACAACTGCAGAGATTAAAATGCCTGAAACTTTTGTTGTACATCTTGGAAATAGCAAGGAGCTTATGGAAGTTGCAGAAGATAGTGTGGCAAAGAGAGTTCTTCGTGAGCATGTTCGGGAATCTCTTGGAGTGAGAAATGATGATCTACTTTTTGCCATCATAAATAGTGTTTCTCGTGGTAAAGGGCAGGATCTATTTCTTCACTCCTTTTATGAAAGTTTGCAACTCATTCAGGAGAAGAAACTCCAGTTGCCATCTTTGCATGCTGTGGTAGTAGGGAGTGATATGAATGCTCAGACGAAGTTTGAAATGGAACTTCGCAAATTTGTTGTTGAAAAAAAGATTCAGAATCATGTTCACTTTGTTAACAAAACCCTGGCTGTGGCTCCTTACCTGGCTGCTGTTGATGTTCTTGTTCAGAATTCTCAGGCACGGGGAGAATGTTTTGGAAGGATAACCATTGAAGCAATGGCATTTCGGCTGCCTGTACTGGGAACTGCTGCTGGAGGCACGATGGAGATTGTGGTGAATGGGACAACCGGTTTGCTGCATCCTGTTGGGAAAGAAGGCGTGACACCTCTCGCGGAGAACATTGTGAAATTGGCTAGTCATGTTGAGAAGAGGCTAACAATGGGAAAGAAAGGGTATGAAAGAGTGAAGGAGAGGTTTCTGGAGCACCATATGTCGCAGAGAATTGCATTGGTTCTGAAGGAAGTTTTACAGAAGGCTAGGCAATAG

Predicted protein sequences of Glyma04g03170

Limit To All Plant Sequences

>Glyma04g03170.1   sequence type=predicted peptide   gene model=Glyma04g03170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKHSVAMAKKRWLIMLAAFLSVSTVTVLLMRSNNSDSCNTNHFTIAQDNNQIRSPVQLTNAASSPLNFMKSKLVLMVSHELSLSGGPLLLMELAFLLRGVGSDVVWITNQKPSEHDQVIYSLESKMLDRGVQVLSAKGEKAIDTALKADMVILNTAVAGKWLDAVLKEKVAHVLPKVLWWIHEMRGHYFKVEYVKHLPFVAGAMIDSHTTAEIKMPETFVVHLGNSKELMEVAEDSVAKRVLREHVRESLGVRNDDLLFAIINSVSRGKGQDLFLHSFYESLQLIQEKKLQLPSLHAVVVGSDMNAQTKFEMELRKFVVEKKIQNHVHFVNKTLAVAPYLAAVDVLVQNSQARGECFGRITIEAMAFRLPVLGTAAGGTMEIVVNGTTGLLHPVGKEGVTPLAENIVKLASHVEKRLTMGKKGYERVKERFLEHHMSQRIALVLKEVLQKARQ*

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