Glyma04g03160 - SoyBase

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Report for Sequence Feature Glyma04g03160

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2310387
stop:	2313199
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75430	AT	Annotation by Michelle Graham. TAIR10: BEL1-like homeodomain 11 \| chr1:28308121-28309517 REVERSE LENGTH=290	SoyBase	E_val: 5.00E-105	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0773	KOG	Transcription factor MEIS1 and related HOX domain proteins	JGI		ISS
PTHR11850	Panther	HOMEOBOX PROTEIN	JGI		ISS
PTHR11850:SF14	Panther	BEL1 HOMEOTIC PROTEIN	JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF07526	PFAM	Associated with HOX	JGI		ISS
UniRef100_B9R804	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bel1 homeotic protein, putative n=1 Tax=Ricinus communis RepID=B9R804_RICCO	SoyBase	E_val: 2.00E-149	ISS
UniRef100_UPI000233A994	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A994 related cluster n=1 Tax=unknown RepID=UPI000233A994	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03160

Paralog	Evidence	Comments
Glyma06g03210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g029200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03160

Limit To All Plant Sequences

>Glyma04g03160.2   sequence type=CDS   gene model=Glyma04g03160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCTTCATGCGACGTGGCATCCCCACCAAAGACCCTTAAACCCGGGTCTCATCAACCCCAATTACTTCATGTCTGGACAAGAGGCACGTGAGCCTTGTAACAACCCACCTGTGGAGCAGCATAATATAACCAGTGACTACTTTTACAATACTGGGAGTGGCACTTTTGCTTCTTCTTCCCCTTTGAACAACCGTTCTCCTAATTCCACCAGCTCTTATGCTGCTGTCATTGGGAACTCCAGGTACCTCAAACCGGTTCAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGGTTGATAGAATCAATGAGAAGTATGCTGAGAAGTTGTTTCGTGGGAGTAGAGGCAGTGCTAGGACACTTTCCTCAGAGTTGAAGGCAGAGTTGGGGAATAATGGTCATTTATTGGCTGACAAACATGAACATCAAATCAAAATTGCACGGTTGATTACTTTATTGGATGAGGTTGAGGGAAGGTGTGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCATCTTTTGAGATGATAGCAGGTTTGGGAGCTGCGAAGTGTTACACTGCTTTGGCACTTCAAGCCATGTCAAGGCATTTCTGCAGCTTGAGAGATGCCATATTGTCACAAATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATCAGTAGTGGGTTGTCTCAACTAAGCTTGTTTGATAGAGACAGTAGACAGAGTAGAATGTCTCTCCAACAACTTGGGGTGATCCGAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCTATTCTTCGTTCTTGGCTCTTCGAGCACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCACGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAGGAGTTTGGAGAGTTTTCTGAAGACTCCAACCCGGCTGGTAACAACTACTTGACGAGGGAAGATACCACGGATTGTGTAGAGGATTGA

Predicted protein sequences of Glyma04g03160

Limit To All Plant Sequences

>Glyma04g03160.2   sequence type=predicted peptide   gene model=Glyma04g03160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLHATWHPHQRPLNPGLINPNYFMSGQEAREPCNNPPVEQHNITSDYFYNTGSGTFASSSPLNNRSPNSTSSYAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFRGSRGSARTLSSELKAELGNNGHLLADKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDSRQSRMSLQQLGVIRSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGEFSEDSNPAGNNYLTREDTTDCVED*

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