Glyma04g03150 - SoyBase

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Report for Sequence Feature Glyma04g03150

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2304424
stop:	2308877
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75410	AT	Annotation by Michelle Graham. TAIR10: BEL1-like homeodomain 3 \| chr1:28300095-28301890 REVERSE LENGTH=524	SoyBase	E_val: 4.00E-112	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase	SoyBase	N/A	ISS
GO:0048513	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0773	KOG	Transcription factor MEIS1 and related HOX domain proteins	JGI		ISS
PTHR11850	Panther	HOMEOBOX PROTEIN	JGI		ISS
PTHR11850:SF14	Panther	BEL1 HOMEOTIC PROTEIN	JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF07526	PFAM	Associated with HOX	JGI		ISS
UniRef100_G7I5U5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BEL1-like homeodomain protein n=1 Tax=Medicago truncatula RepID=G7I5U5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A993	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A993 related cluster n=1 Tax=unknown RepID=UPI000233A993	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03150

Paralog	Evidence	Comments
Glyma06g03200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g029100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g03150

Limit To All Plant Sequences

>Glyma04g03150.3   sequence type=transcript   gene model=Glyma04g03150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATATAATCTCTTGGGATTGCCATTTGTCTGGGATACATACCTCAAAAAACTCAACCTCAATTTATGGATTCTTGTCTATCACTTCTGCTCTGAAACCCACTCTTATTGAATTTTAGTCCCTTGTTACTGCTTCTATCTCTTACTTTCAGAATAGCAGGGGATTTTTGTTATAAAAGCGATGTGCAGCTGATTCCATTGTGAAGAAGAGAGCAGAAAGAAATCAGCTTATAATAATGTATCCCAACCAAGCCTTTTCTTTAGGGTCCTATGCGGAGATGATGTCTGGGACTTCTCTTTTTCCTCATGACTACAGTGAAACTGTAGGAGGAGGACAAAACGAGGTTAAGTTTATCACAGCAATGGGTGAGACAGTGACTATGCACTCTATTAATGGCCATTCCAATGCTGCAAGTGGTGATCCAGCATGCAACTCTTTTGCTGGGGATTCCCATGTTGTTTCAAGGACACAAATGGGAATGGTAGATAGTGAGCAAAACATCAATTGCCAGGGCCTATCTCTCAGTCTCGGGACACTCATGCCTTCTAATGCATCCGTCTCTCCATTTCAATACCAATATCACGACACGGGTCTCTTACCACTAATGAATGATTTTCCAAATATAAAGGGAACCATGTCTCTCAAAGATGATGAGGCCAATAACCTACATGGAGAGTTTAGAAGTGTTGAATGCATGGCATCTGTGTCCTCTGGAGGCTTTCATGACATGATAAAAAAGGAGGGTTTTTACAACCCCAACCACCCCTCAATGTGTCTTAAAGAAGTCCCCTCTGATCTACCAGGTTACTCAAACAGCATTTTGAACTCCCAATACCTTAAGGCGGCACAGGAGTTACTTGATGAAATAGTTAGTGTCCAAAAGGCTTTGAAGCAATCTGGAATGGAAAAACAAGAGAACAACCGTGACATTGGATTAGATGGCTCTAAAGATGCTGATGGAAAATCTACCAGTCAATCTATGCAAATGTCTTCTGCCCCTAATGGTTCCAGTGCCAATGCTTCTAGTGACCTATCGTCTGCAGAACGCCAGACCTTGTTGGACAAGAAAACAAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCCGGGTGTGGAGCAGCAGAACCATATACTACACTTGCTTTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCCATCAGTGGCCAAATTCAAGTGACACAAAGAAGCCTTGGGGAGCAAGAGGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTTAGACAACAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGGCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCAAGGGTGCGTCTCTGGAAGCCAATGGTTGAGGAAATGTACAAAGAGGAGTTTGGAGATTCCGAGATGAACTGCAACCTTTCATCTGAGAACAACACGGTCAAAGGGTGACCAAAACCAACAAAGGCTTGGCTTGAACAACAACAACAACAGCAGCAGCAACTTTTATTCTATCTCAACCAACGAGAATGGTGGGGATGGAGGCCTAATGGGTACTTCTACTCATGCCACATATGATTTATCAGAGTTGGGTAACTTTACTGTGGGTAGCCACGTTTCCCTTGCATTGGAGTTGAGGAACTGTGAAAATGATGGGTTTGCCATGTCTGATGATGCCATACAGAAACGACGTAAGCAAACATTGTCCTCTTCCCCGGAGACTGATTTGCTAGATTATCATTTCACGGATTCAGGAAAGCAACAGCACAGGTTTGGCAATCCCCATTTGCTGCATGAGTTTGTCGTATGAAATCTAGCAAAAAATATTTGATGATTTTAATGGATCTCTGAAGAGGTGTACCTCAACAAAGCTGAAAGAGAAAGCCTATGCGGTGTTGCTGCTGCTGCTGATGCTACCTTTTTTTTTCTTCCTCATTCTTGTTGCCCATTGTTCGTAAAAGTGATGTAAATCACGAAACCGTACAAAATATACAGGTAGACATGTGTAGATATTTTCGCTTGTAATATTTTACAGATGATTGGTTGTATGTATGTGCAGGCAATTTTTGTAAGGATAAAAGAAAAACTCTCGTGCATTATGTTGAATAATAAGGAATCTTGTAAAAGAAAAAAAAACACGGTAACAAGTACGATGTGAATATTGATTCTTGTTAGTAAATTC

Coding sequences of Glyma04g03150

Limit To All Plant Sequences

>Glyma04g03150.2   sequence type=CDS   gene model=Glyma04g03150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCCCAACCAAGCCTTTTCTTTAGGGTCCTATGCGGAGATGATGTCTGGGACTTCTCTTTTTCCTCATGACTACAGTGAAACTGTAGGAGGAGGACAAAACGAGGTTAAGTTTATCACAGCAATGGGTGAGACAGTGACTATGCACTCTATTAATGGCCATTCCAATGCTGCAAGTGGTGATCCAGCATGCAACTCTTTTGCTGGGGATTCCCATGTTGTTTCAAGGACACAAATGGGAATGGTAGATAGTGAGCAAAACATCAATTGCCAGGGCCTATCTCTCAGTCTCGGGACACTCATGCCTTCTAATGCATCCGTCTCTCCATTTCAATACCAATATCACGACACGGGTCTCTTACCACTAATGAATGATTTTCCAAATATAAAGGGAACCATGTCTCTCAAAGATGATGAGGCCAATAACCTACATGGAGAGTTTAGAAGTGTTGAATGCATGGCATCTGTGTCCTCTGGAGGCTTTCATGACATGATAAAAAAGGAGGGTTTTTACAACCCCAACCACCCCTCAATGTGTCTTAAAGAAGTCCCCTCTGATCTACCAGGTTACTCAAACAGCATTTTGAACTCCCAATACCTTAAGGCGGCACAGGAGTTACTTGATGAAATAGTTAGTGTCCAAAAGGCTTTGAAGCAATCTGGAATGGAAAAACAAGAGAACAACCGTGACATTGGATTAGATGGCTCTAAAGATGCTGATGGAAAATCTACCAGTCAATCTATGCAAATGTCTTCTGCCCCTAATGGTTCCAGTGCCAATGCTTCTAGTGACCTATCGTCTGCAGAACGCCAGACCTTGTTGGACAAGAAAACAAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCCGGGTGTGGAGCAGCAGAACCATATACTACACTTGCTTTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCCATCAGTGGCCAAATTCAAGTGACACAAAGAAGCCTTGGGGAGCAAGAGGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTTAGACAACAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGGCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCAAGGGTGCGTCTCTGGAAGCCAATGGTTGAGGAAATGTACAAAGAGGAGTTTGGAGATTCCGAGATGAACTGCAACCTTTCATCTGAGAACAACACGGTCAAAGGTAAAAGAGATGATGTTCAAGAGTCTGATAACATTAACAATAATAATAATAAATGGGAAGAGTCACAGGACAATTTAGTAACTGTTGACAGTGTGCAAGTCCAACCTCAAGCAGAAATGGATAGAGTGGTCAATGTAGAAAATGTGGTGATGAATTCTGGAACTGGGAAATTGCAGGGTGACCAAAACCAACAAAGGCTTGGCTTGAACAACAACAACAACAGCAGCAGCAACTTTTATTCTATCTCAACCAACGAGAATGGTGGGGATGGAGGCCTAATGGGTACTTCTACTCATGCCACATATGATTTATCAGAGTTGGGTAACTTTACTGTGGGTAGCCACGTTTCCCTTGCATTGGAGTTGAGGAACTGTGAAAATGATGGGTTTGCCATGTCTGATGATGCCATACAGAAACGACGTAAGCAAACATTGTCCTCTTCCCCGGAGACTGATTTGCTAGATTATCATTTCACGGATTCAGGAAAGCAACAGCACAGGTTTGGCAATCCCCATTTGCTGCATGAGTTTGTCGTATGA

>Glyma04g03150.3   sequence type=CDS   gene model=Glyma04g03150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCCCAACCAAGCCTTTTCTTTAGGGTCCTATGCGGAGATGATGTCTGGGACTTCTCTTTTTCCTCATGACTACAGTGAAACTGTAGGAGGAGGACAAAACGAGGTTAAGTTTATCACAGCAATGGGTGAGACAGTGACTATGCACTCTATTAATGGCCATTCCAATGCTGCAAGTGGTGATCCAGCATGCAACTCTTTTGCTGGGGATTCCCATGTTGTTTCAAGGACACAAATGGGAATGGTAGATAGTGAGCAAAACATCAATTGCCAGGGCCTATCTCTCAGTCTCGGGACACTCATGCCTTCTAATGCATCCGTCTCTCCATTTCAATACCAATATCACGACACGGGTCTCTTACCACTAATGAATGATTTTCCAAATATAAAGGGAACCATGTCTCTCAAAGATGATGAGGCCAATAACCTACATGGAGAGTTTAGAAGTGTTGAATGCATGGCATCTGTGTCCTCTGGAGGCTTTCATGACATGATAAAAAAGGAGGGTTTTTACAACCCCAACCACCCCTCAATGTGTCTTAAAGAAGTCCCCTCTGATCTACCAGGTTACTCAAACAGCATTTTGAACTCCCAATACCTTAAGGCGGCACAGGAGTTACTTGATGAAATAGTTAGTGTCCAAAAGGCTTTGAAGCAATCTGGAATGGAAAAACAAGAGAACAACCGTGACATTGGATTAGATGGCTCTAAAGATGCTGATGGAAAATCTACCAGTCAATCTATGCAAATGTCTTCTGCCCCTAATGGTTCCAGTGCCAATGCTTCTAGTGACCTATCGTCTGCAGAACGCCAGACCTTGTTGGACAAGAAAACAAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCCGGGTGTGGAGCAGCAGAACCATATACTACACTTGCTTTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCCATCAGTGGCCAAATTCAAGTGACACAAAGAAGCCTTGGGGAGCAAGAGGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTTAGACAACAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGGCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCAAGGGTGCGTCTCTGGAAGCCAATGGTTGAGGAAATGTACAAAGAGGAGTTTGGAGATTCCGAGATGAACTGCAACCTTTCATCTGAGAACAACACGGTCAAAGGGTGA

Predicted protein sequences of Glyma04g03150

Limit To All Plant Sequences

>Glyma04g03150.2   sequence type=predicted peptide   gene model=Glyma04g03150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYPNQAFSLGSYAEMMSGTSLFPHDYSETVGGGQNEVKFITAMGETVTMHSINGHSNAASGDPACNSFAGDSHVVSRTQMGMVDSEQNINCQGLSLSLGTLMPSNASVSPFQYQYHDTGLLPLMNDFPNIKGTMSLKDDEANNLHGEFRSVECMASVSSGGFHDMIKKEGFYNPNHPSMCLKEVPSDLPGYSNSILNSQYLKAAQELLDEIVSVQKALKQSGMEKQENNRDIGLDGSKDADGKSTSQSMQMSSAPNGSSANASSDLSSAERQTLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMNCNLSSENNTVKGKRDDVQESDNINNNNNKWEESQDNLVTVDSVQVQPQAEMDRVVNVENVVMNSGTGKLQGDQNQQRLGLNNNNNSSSNFYSISTNENGGDGGLMGTSTHATYDLSELGNFTVGSHVSLALELRNCENDGFAMSDDAIQKRRKQTLSSSPETDLLDYHFTDSGKQQHRFGNPHLLHEFVV*

>Glyma04g03150.3   sequence type=predicted peptide   gene model=Glyma04g03150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYPNQAFSLGSYAEMMSGTSLFPHDYSETVGGGQNEVKFITAMGETVTMHSINGHSNAASGDPACNSFAGDSHVVSRTQMGMVDSEQNINCQGLSLSLGTLMPSNASVSPFQYQYHDTGLLPLMNDFPNIKGTMSLKDDEANNLHGEFRSVECMASVSSGGFHDMIKKEGFYNPNHPSMCLKEVPSDLPGYSNSILNSQYLKAAQELLDEIVSVQKALKQSGMEKQENNRDIGLDGSKDADGKSTSQSMQMSSAPNGSSANASSDLSSAERQTLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMNCNLSSENNTVKG*

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