Glyma04g03140 - SoyBase

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Report for Sequence Feature Glyma04g03140

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2297325
stop:	2300278
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G45110	AT	Annotation by Michelle Graham. TAIR10: Tetrapyrrole (Corrin/Porphyrin) Methylases \| chr1:17052572-17054546 FORWARD LENGTH=343	SoyBase	E_val: 1.00E-106	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR21091	Panther	METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED	JGI		ISS
PTHR21091:SF18	Panther	S-ADENOSYLMETHIONINE-DEPENDENT METHYTRANSFERASE	JGI		ISS
PF00590	PFAM	Tetrapyrrole (Corrin/Porphyrin) Methylases	JGI		ISS
UniRef100_B9R806	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uroporphyrin-III methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9R806_RICCO	SoyBase	E_val: 2.00E-105	ISS
UniRef100_I1JT78	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT78_SOYBN	SoyBase	E_val: 1.00E-141	ISS

Expression Patterns of Glyma04g03140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03140

Paralog	Evidence	Comments
Glyma06g03190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g03140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03140

Limit To All Plant Sequences

>Glyma04g03140.2   sequence type=CDS   gene model=Glyma04g03140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTCACCAAAAGGATACACCTCACTCGCACTCTCTGAAACCCGGTCTTTACCTCGTTGGAACACCAATCGGAAATCTCGAAGATATCACTCTGAGGGCTATTCGCGTGCTGAACTCGGCTGACGTCATACTCTCAGAGGACACGAGGCACTCGGGGAAGTTGCTTCATCACTATCACATCAAAACACCCCTTATGAGTTATCACAAGTTCAATGAATCGCAAAGGGAACAGGTTGTGCTGAGGAGGTTGAAGCAGGGTGAGATTGTGGCTCTCATAAGTGATGCTGGAATGCCAGGCATCAGTGATCCCGGTATGGAGTTGGCCAAACTGTGTGTGAGTGAGAATATCCTGGTTGTTCCAATCCCTGGTCCCTGTGCTTTGGTATCAGCTCTTTCTGCCTCGGGTTTAACTACTGATGAATTTACATTTGGTAATAAGCTGGCTAAACTGAATTTTGGCATTTATGGCATTTTGGGGTCTAAGATGGCTGTTGTGATGTATGATTTTGTAGTTGGTTTTCTTCCTAAACATTCGGAATTGAGAAGAAAAAGGCTCATGGTTTCAGCTGATCAAACTACAACTCAAATATTTTATGTTGCTCCTCACAAGCTTTCTCAGTTCCTTGATGAGAGTTCTTCAATTTTTGGTGATGCAAGGCAATGTGTTATTGCTCGGGAAATGACTAAGTTACATGAAGAGCGGGATGACACCTTGGAGGAAAATGCTAGTAGAGTAAAAGCCATTAAATGCATTAAGCCTGCTTTTGCAGTACCATTACACGTAGTTAGTCGAATGGATCTTGCCGGTGCTGTCTTTTGGTACATTTTAATTCCTTAA

Predicted protein sequences of Glyma04g03140

Limit To All Plant Sequences

>Glyma04g03140.2   sequence type=predicted peptide   gene model=Glyma04g03140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GHQKDTPHSHSLKPGLYLVGTPIGNLEDITLRAIRVLNSADVILSEDTRHSGKLLHHYHIKTPLMSYHKFNESQREQVVLRRLKQGEIVALISDAGMPGISDPGMELAKLCVSENILVVPIPGPCALVSALSASGLTTDEFTFGNKLAKLNFGIYGILGSKMAVVMYDFVVGFLPKHSELRRKRLMVSADQTTTQIFYVAPHKLSQFLDESSSIFGDARQCVIAREMTKLHEERDDTLEENASRVKAIKCIKPAFAVPLHVVSRMDLAGAVFWYILIP*

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