Glyma04g03120 - SoyBase

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Report for Sequence Feature Glyma04g03120

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2261125
stop:	2266594
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36360	AT	Annotation by Michelle Graham. TAIR10: beta-galactosidase 3 \| chr4:17176840-17181143 REVERSE LENGTH=855	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005990	GO-bp	Annotation by Michelle Graham. GO Biological Process: lactose catabolic process	SoyBase	N/A	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0019513	GO-bp	Annotation by Michelle Graham. GO Biological Process: lactose catabolic process, using glucoside 3-dehydrogenase	SoyBase	N/A	ISS
GO:0019515	GO-bp	Annotation by Michelle Graham. GO Biological Process: lactose catabolic process via UDP-galactose	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG0496	KOG	Beta-galactosidase	JGI		ISS
PTHR23421	Panther	BETA-GALACTOSIDASE RELATED	JGI		ISS
PTHR23421:SF2	Panther	BETA-GALACTOSIDASE	JGI		ISS
PF01301	PFAM	Glycosyl hydrolases family 35	JGI		ISS
UniRef100_Q9M5J3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-galactosidase n=1 Tax=Vigna radiata var. radiata RepID=Q9M5J3_VIGRR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339AFA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339AFA related cluster n=1 Tax=unknown RepID=UPI0002339AFA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03120

Paralog	Evidence	Comments
Glyma06g03160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g028600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03120

Limit To All Plant Sequences

>Glyma04g03120.1   sequence type=CDS   gene model=Glyma04g03120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACCATTGCCAATTCAGTTTCGAAGCTACTCACATTGTTTCTCACGGTCTTGTTTGTGGGTTCTGAGCTGACACACTGTAATGTCACCTACGACAGAAAGTCTCTTCTCATCAATGGCCAGAGGAGAATCCTCATCTCTGGCTCCATTCACTATCCCAGAAGCACCCCTGAGATGTGGGAGGATCTAATTTGGAAGGCCAAACACGGAGGACTTGATGTCATAGACACTTATGTCTTCTGGGATGTCCATGAACCTTCTCCTGGCAATTACGATTTTGAAGGAAGGTATGATCTAGTACGGTTCATTAAGACGGTGCAGAAGGTGGGGCTTTATGCCAATCTTCGGATTGGACCTTATGTATGCGCTGAGTGGAACTTTGGAGGAATTCCTGTATGGTTGAAGTATGTTCCTGGCGTAAGCTTCAGAACGGATAATGAGCCTTTCAAGGCGGCAATGCAAGGTTTCACGCAGAAAATTGTCCAGATGATGAAGAGTGAGAAGTTGTTTCAATCTCAGGGTGGTCCAATCATTCTCTCTCAGATTGAGAATGAGTACGGGCCAGAGAGTAGGGGAGCTGCTGGCCGTGCATATGTAAACTGGGCTGCAAGTATGGCTGTTGGATTGGGTACAGGAGTGCCATGGGTGATGTGCAAGGAAAATGATGCCCCAGATCCTGTGATAAATTCATGTAATGGTTTTTACTGTGATGATTTCTCTCCAAATAAACCATACAAGCCTAGCATGTGGACCGAGACTTGGAGTGGCTGGTTTACAGAATTTGGCGGCCCAATTCACCAGCGACCAGTTGAGGATCTATCCTTTGCAGTTGCTCGTTTCATACAAAAGGGTGGCTCATATGTGAATTATTACATGTACCATGGAGGAACTAACTTTGGACGATCAGCTGGAGGCCCATTCATAACTACAAGCTATGACTATGATGCTCCAATTGATGAATATGGTTTGATCAGGCAACCAAAATATAGTCATTTGAAGGAGCTTCATAAAGCTATCAAGCGATGTGAACATGCTTTGGTGTCTTTGGATCCCACAGTTTTGTCATTAGGAACACTACTGCAGGCTCATGTATTCTCTTCAGGAACTGGAACATGTGCAGCTTTTCTAGCAAACTATAATGCACAGTCAGCTGCTACAGTGACATTCAATAACAGGCACTATGATTTACCTCCTTGGTCCATAAGCATCCTTCCTGATTGCAAAATTGATGTATTTAATACTGCAAAAGTGAGAGTTCAACCTTCACAGGTGAAAATGCTTCCTGTCAAACCAAAGTTGTTCTCCTGGGAGAGCTATGATGAAGATCTATCTTCTCTGGCCGAAAGTTCAAGGATTACAGCTCCTGGACTCTTAGAACAGCTGAACGTTACTAGAGATACCAGTGACTATCTATGGTACATAACCAGCGTTGACATAAGTTCATCAGAATCCTTTCTTCGAGGCGGACAAAAACCCAGCATTAATGTGCAGTCTGCAGGACATGCTGTTCATGTGTTTGTTAATGGGCAATTTTCAGGGTCGGCTTTCGGGACAAGGGAGCAGAGAAGTTGCACATATAATGGACCTGTTGACCTACGCGCTGGAGCAAATAAAATTGCTCTTCTCAGCGTGACTGTTGGATTACAGAATGTTGGTCGGCATTATGAAACATGGGAGGCAGGGATCACTGGTCCAGTTTTGCTCCATGGTCTTGACCAAGGACAGAAAGATTTGACGTGGAACAAGTGGTCATATAAGGTTGGCCTAAGAGGAGAGGCTATGAATTTGGTATCTCCCAATGGAGTCTCGTCTGTTGACTGGGTCCAAGAGTCACAAGCTACTCAAAGCCGGTCACAATTAAAATGGTACAAGGCATATTTTGATGCACCCGGGGGAAAGGAACCACTGGCTTTGGACCTTGAAAGCATGGGTAAGGGTCAAGTATGGATAAACGGGCAGAGCATAGGGAGATATTGGATGGCTTATGCAAAGGGTGACTGTAATTCTTGCACTTATTCTGGGACCTTTCGGCCTGTAAAGTGCCAACTTGGCTGTGGACAACCCACTCAACGATGGTATCACGTTCCAAGGTCCTGGCTGAAGCCAACAAAGAACTTGATAGTAGTGTTTGAAGAATTAGGTGGAAATCCTTGGAAAATATCTTTGGTAAAGAGAGTGGCACATACTCCGGCAGTTCATGGGCAGTGA

Predicted protein sequences of Glyma04g03120

Limit To All Plant Sequences

>Glyma04g03120.1   sequence type=predicted peptide   gene model=Glyma04g03120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTIANSVSKLLTLFLTVLFVGSELTHCNVTYDRKSLLINGQRRILISGSIHYPRSTPEMWEDLIWKAKHGGLDVIDTYVFWDVHEPSPGNYDFEGRYDLVRFIKTVQKVGLYANLRIGPYVCAEWNFGGIPVWLKYVPGVSFRTDNEPFKAAMQGFTQKIVQMMKSEKLFQSQGGPIILSQIENEYGPESRGAAGRAYVNWAASMAVGLGTGVPWVMCKENDAPDPVINSCNGFYCDDFSPNKPYKPSMWTETWSGWFTEFGGPIHQRPVEDLSFAVARFIQKGGSYVNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYSHLKELHKAIKRCEHALVSLDPTVLSLGTLLQAHVFSSGTGTCAAFLANYNAQSAATVTFNNRHYDLPPWSISILPDCKIDVFNTAKVRVQPSQVKMLPVKPKLFSWESYDEDLSSLAESSRITAPGLLEQLNVTRDTSDYLWYITSVDISSSESFLRGGQKPSINVQSAGHAVHVFVNGQFSGSAFGTREQRSCTYNGPVDLRAGANKIALLSVTVGLQNVGRHYETWEAGITGPVLLHGLDQGQKDLTWNKWSYKVGLRGEAMNLVSPNGVSSVDWVQESQATQSRSQLKWYKAYFDAPGGKEPLALDLESMGKGQVWINGQSIGRYWMAYAKGDCNSCTYSGTFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRVAHTPAVHGQ*

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