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Report for Sequence Feature Glyma04g03090

Feature Type:gene_model
Chromosome:Gm04
Start:2251499
stop:2254836
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09850AT Annotation by Michelle Graham. TAIR10: xylem bark cysteine peptidase 3 | chr1:3201848-3203875 FORWARD LENGTH=437 SoyBaseE_val: 0ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0008234GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity SoyBaseN/AISS
KOG1543 KOG Cysteine proteinase Cathepsin L JGI ISS
PTHR12411Panther CYSTEINE PROTEASE FAMILY C1-RELATED JGI ISS
PTHR12411:SF44Panther CATHEPSIN L-RELATED JGI ISS
PF00112PFAM Papain family cysteine protease JGI ISS
PF00396PFAM Granulin JGI ISS
PF08246PFAM Cathepsin propeptide inhibitor domain (I29) JGI ISS
UniRef100_E6NU59UniRef Annotation by Michelle Graham. Most informative UniRef hit: JHL18I08.3 protein n=1 Tax=Jatropha curcas RepID=E6NU59_9ROSI SoyBaseE_val: 0ISS
UniRef100_I1JT73UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT73_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g03090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g03090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g028300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03090
>Glyma04g03090.1   sequence type=CDS   gene model=Glyma04g03090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCGTTTATATTCCCTTTCTCTTTTACAATTCCTGTCTCTGATTCTCCTTTTCACACTTTTCTTCTTGTCTGCCTCTGACACCTCCGAACTGTTCGAAAAGTGGTGTAAGGAACACAGCAAAACATACTCTTCCGAGGAAGAAAAACTGTACAGGCTCAAAGTGTTCGAGGACAACTATGCCTTTGTCGCCCAACACAACCAAAACGCCAATAATAACAATAATAATTCAAGCTACACTCTTTCCCTCAACGCTTTCGCCGATCTCACCCACCATGAATTCAAAACCACTCGTCTCGGTCTTCCCCTTACCTTGCTTCGATTCAAACGTCCCCAGAATCAACAATCCCGTGACCTTCTGCACATTCCTTCTCAGATCGATTGGAGACAGAGCGGCGCAGTTACACCCGTCAAAGACCAAGCAAGCTGTGGTGCATGTTGGGCGTTCTCAGCTACTGGTGCTATTGAAGGCATAAATAAGATTGTCACAGGGTCTCTTGTAAGCCTTTCTGAACAAGAGCTGATAGATTGTGATACATCCTACAACAGTGGTTGTGGAGGTGGACTCATGGATTTTGCATACCAATTTGTCATCGACAACAAAGGGATTGACACTGAGGATGATTATCCGTATCAAGCTCGGCAACGGTCCTGCAGTAAGGACAAGTTAAAAAGGCGTGCTGTTACAATTGAGGATTATGTTGACGTGCCTCCGAGTGAGGAAGAGATACTAAAGGCCGTTGCATCACAACCTGTAAGCGTAGGCATATGTGGTAGTGAAAGAGAATTCCAGTTGTACTCAAAGGGTATCTTCACTGGGCCATGTTCAACTTTTTTGGATCACGCAGTATTGATAGTAGGATATGGTTCAGAAAATGGAGTTGATTATTGGATTGTAAAGAATTCATGGGGAAAATATTGGGGAATGAATGGCTACATACACATGATACGAAATAGTGGCAATTCCAAAGGAATATGCGGAATTAACACATTAGCTTCATATCCTGTCAAGACCAAGCCTAATCCTCCTATCCCTCCTCCCCCAGGTCCTGTAAGATGTAATTTGTTTACTCACTGTTCAGAAGGAGAAACATGTTGCTGTGCCAAGAGCTTTCTTGGAATATGCTTTTCTTGGAAATGCTGTGGGTTAACTTCTGCCGTGTGCTGCAAAGACAAGCGCCACTGTTGCCCCCAAGATTATCCGATTTGTGATACAAGAAGAGGTCAATGTTTAAAGAGAACTGCAAATGGGACGACAACAATCACTTCTGAGAACCAAGATTTTTCCCACAAGTCAAGAGGTTGGAAATCTCAGTGA
Predicted protein sequences of Glyma04g03090
>Glyma04g03090.1   sequence type=predicted peptide   gene model=Glyma04g03090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRLYSLSLLQFLSLILLFTLFFLSASDTSELFEKWCKEHSKTYSSEEEKLYRLKVFEDNYAFVAQHNQNANNNNNNSSYTLSLNAFADLTHHEFKTTRLGLPLTLLRFKRPQNQQSRDLLHIPSQIDWRQSGAVTPVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDTSYNSGCGGGLMDFAYQFVIDNKGIDTEDDYPYQARQRSCSKDKLKRRAVTIEDYVDVPPSEEEILKAVASQPVSVGICGSEREFQLYSKGIFTGPCSTFLDHAVLIVGYGSENGVDYWIVKNSWGKYWGMNGYIHMIRNSGNSKGICGINTLASYPVKTKPNPPIPPPPGPVRCNLFTHCSEGETCCCAKSFLGICFSWKCCGLTSAVCCKDKRHCCPQDYPICDTRRGQCLKRTANGTTTITSENQDFSHKSRGWKSQ*






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