Glyma04g03080 - SoyBase

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Report for Sequence Feature Glyma04g03080

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2247004
stop:	2250382
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06060	AT	Annotation by Michelle Graham. TAIR10: LisH and RanBPM domains containing protein \| chr1:1833071-1834516 FORWARD LENGTH=213	SoyBase	E_val: 7.00E-103	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2659	KOG	LisH motif-containing protein	JGI		ISS
PTHR12864	Panther	RAN BINDING PROTEIN 9-RELATED	JGI		ISS
PF10607	PFAM	Ran binding protein in the microtubule-organising centre	JGI		ISS
UniRef100_C6T9V4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T9V4_SOYBN	SoyBase	E_val: 8.00E-156	ISS
UniRef100_E6NU60	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: JHL18I08.4 protein n=1 Tax=Jatropha curcas RepID=E6NU60_9ROSI	SoyBase	E_val: 2.00E-123	ISS

Expression Patterns of Glyma04g03080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03080

Paralog	Evidence	Comments
Glyma06g03120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g028200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g03080

Limit To All Plant Sequences

>Glyma04g03080.2   sequence type=transcript   gene model=Glyma04g03080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCGATAAAATATTCCTCACTCTTAGCGAAACCCTTTAGCCGTGTCGCATCTATTTCAATTAATTTTCTCCTCAAAGATATTTCCCAACCCTAATTTCTGATGGGCAAAATTGAGCAAAGGAGGGATTGGGACACATGAAAAATATAATATTTCTCGTGCTCTGCTGCATACTCTATTTAGCTCTCACATGAATTACCACTAATCTGCGTTTTGTTTCCGGTGGTGGTGATTACAATTTTTTGCCCTCATTTTTATTTTTGAAAGAGAACATAATTCAACCCCAAGGGGTTGGTTGAGTGGAGTAAGACAGGTCTTTAGGTTTGAAACCTCGCTCTTCTCCTCGAGGTGAAATAAATGCTGTAAATGATAATGACATCCACAACATTGTTCTGTCATATCTTATACATAATTGCTACAAAGAATCGGTAGAATCATTCATTGCTTGCACGGGAGCAAAGCAGCCGACAGATTATTTGGAGGACATGGATAAAAGGAAAAGAATTTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTACTGAACAGCTGGCAAAGGATATTCTAGAGAACAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTGTTGAGCTTGTCTGCTCAAGGAAATGCACAGAAGCTTTGGAGTTTGCTCAGACCAAATTGGGCCCTTTCGGAAAGGAGCCCAAATATATGGAAAAGCTTGAAGACTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGAAATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGATGGAAAACAGTAAAAAATGGAGAGTCAATTGGGGAATGAAGCTCGTTTACCTTGAACCTTTCTCGTCTCATATTGGATTGGTGTACGGTTTCATCATAGTGTAAAGTTTTTTGAATGCCTTTTCATCTATAAATTCTTTGTTTCCAAGCTATCTTCTTCTTTTTGGTCTTGCTGCACTTTTGCGAGGCATGAGTAATCTATGAGTGATCATGGCCAAAAATGCAAGATTGAGATGATCCTCCTGTCCGAGGCAGTTGACCTCATCTGGGACCTAATTTCCACTGCCATAATTTCTACTAATTTAAGTTATTTTCAATCCATTGAAAGGTTGGACAGACAAAATTAAGTACCATAATTTCCCTTAATTTAGATGATTTTCAATCCATTGAGGTTGAGCTGCCAAAATTAAGGATATATATTATATTGTTTTAATATTTGATGTAAAATCTTTTGGTTACATGTATGTGGATATGAAAGGAAGATTGAAGACTTCAATCTCTTTTGTCAGTAAGTTTCAAGTTATCAATCAAAACGTTGGGTGTGTACAAAAGGCATGTCTGAATTAAATTTTTATTTGGTCTTTTATGAATTTTTAATTTTATTTATCATTATAATTTTGGTGTGGG

Coding sequences of Glyma04g03080

Limit To All Plant Sequences

>Glyma04g03080.1   sequence type=CDS   gene model=Glyma04g03080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCTGGATCCTCGCCAATACGAAAACCTTGCTGTAAATGATAATGACATCCACAACATTGTTCTGTCATATCTTATACATAATTGCTACAAAGAATCGGTAGAATCATTCATTGCTTGCACGGGAGCAAAGCAGCCGACAGATTATTTGGAGGACATGGATAAAAGGAAAAGAATTTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTACTGAACAGCTGGCAAAGGATATTCTAGAGAACAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTGTTGAGCTTGTCTGCTCAAGGAAATGCACAGAAGCTTTGGAGTTTGCTCAGACCAAATTGGGCCCTTTCGGAAAGGAGCCCAAATATATGGAAAAGCTTGAAGACTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGAAATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGA

>Glyma04g03080.2   sequence type=CDS   gene model=Glyma04g03080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAAGGAAAAGAATTTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTACTGAACAGCTGGCAAAGGATATTCTAGAGAACAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTGTTGAGCTTGTCTGCTCAAGGAAATGCACAGAAGCTTTGGAGTTTGCTCAGACCAAATTGGGCCCTTTCGGAAAGGAGCCCAAATATATGGAAAAGCTTGAAGACTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGAAATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGCTACAGTTGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGGATGGGCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGA

Predicted protein sequences of Glyma04g03080

Limit To All Plant Sequences

>Glyma04g03080.1   sequence type=predicted peptide   gene model=Glyma04g03080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLDPRQYENLAVNDNDIHNIVLSYLIHNCYKESVESFIACTGAKQPTDYLEDMDKRKRIFHFALEGNALKAIELTEQLAKDILENNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLNLPSYTAMERLIQQATVVRQCLSQEAGKDGPPFSLKDFLKS*

>Glyma04g03080.2   sequence type=predicted peptide   gene model=Glyma04g03080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKRKRIFHFALEGNALKAIELTEQLAKDILENNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLNLPSYTAMERLIQQATVVRQCLSQEAGKDGPPFSLKDFLKS*

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