SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g03070

Feature Type:gene_model
Chromosome:Gm04
Start:2242554
stop:2243291
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75490AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr1:28336045-28336665 FORWARD LENGTH=206 SoyBaseE_val: 4.00E-52ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_G7I5V5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor ERF071 n=1 Tax=Medicago truncatula RepID=G7I5V5_MEDTR SoyBaseE_val: 9.00E-79ISS
UniRef100_UPI000233A990UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A990 related cluster n=1 Tax=unknown RepID=UPI000233A990 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g03070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03070
ParalogEvidenceComments
Glyma06g03110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g028100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03070
>Glyma04g03070.2   sequence type=CDS   gene model=Glyma04g03070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAAATCGGGCATTGGAATTGAGGAGAGGAAGCAATTGAAGAAGCCAGCACAAGCCAGCTCGAGAAAGGGTTGCATGAGAGGAAAAGGAGGTCCTGAGAATGCTAGTTGCACCTACAAAGGTGTGAGACAGAGAACATGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAATCGAGGTGCTCGGCTCTGGCTCGGGACTTTTGAGACCTCTCATGAAGCTGCTTTGGCTTATGATGCTGCTGCACGTAAGCTTTATGGCTCTGATGCCAAACTCAATTTACCAGAACTCTCTATCAAATCTCAATCTCAGTGTCCACCACCATCACCACCACCACCTTCTTCTGTTACCAACAACACTCAAATGGAAAACCTGCAGCAGATTCAAAACAATTACATAGACATGGCTACGTGTTCTAATTTCAACAACATCAATAATCCAGAAGTTTCCATGGCCTCTCAGCAGGTTGGAGTTGGACCAATTTACACCAGTGACTCCATCGTGTCTCTTCCCTTGGACACCAATCCCAAGCCTGTGGAGAATGAGGTCGAGTTTCGTCCATCGTGGGCGACAATGAACGAGGGTTTGCCGGTTTTCGATGATTCCATTTGGGCTGAAGCTGCTATGTCTCTAGATTTTCCTCACATTGCAGCAGAGACTGCGATTTACGCGTCGGGGAACAACTTGGCTGATGTTGGTGTTTGGGACTCTCTGCAAACCCCATGGTGCATGTAA
Predicted protein sequences of Glyma04g03070
>Glyma04g03070.2   sequence type=predicted peptide   gene model=Glyma04g03070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKSGIGIEERKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSIKSQSQCPPPSPPPPSSVTNNTQMENLQQIQNNYIDMATCSNFNNINNPEVSMASQQVGVGPIYTSDSIVSLPLDTNPKPVENEVEFRPSWATMNEGLPVFDDSIWAEAAMSLDFPHIAAETAIYASGNNLADVGVWDSLQTPWCM*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo