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Report for Sequence Feature Glyma04g03061

Feature Type:gene_model
Chromosome:Gm04
Start:2234756
stop:2237484
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03061
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01180AT Annotation by Michelle Graham. TAIR10: peptide transporter 5 | chr5:61257-63240 REVERSE LENGTH=570 SoyBaseE_val: 7.00E-109ISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0042938GO-bp Annotation by Michelle Graham. GO Biological Process: dipeptide transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
KOG1237 KOG H+/oligopeptide symporter JGI ISS
PTHR11654Panther OLIGOPEPTIDE TRANSPORTER-RELATED JGI ISS
PTHR11654:SF37Panther OLIGOPEPTIDE TRANSPORTER-RELATED JGI ISS
PF00854PFAM POT family JGI ISS
UniRef100_E6NU64UniRef Annotation by Michelle Graham. Most informative UniRef hit: JHL18I08.8 protein n=1 Tax=Jatropha curcas RepID=E6NU64_9ROSI SoyBaseE_val: 4.00E-180ISS
UniRef100_UPI000233A98DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A98D related cluster n=1 Tax=unknown RepID=UPI000233A98D SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g03061
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g03061 not represented in the dataset
Glyma04g03061 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g03061 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g028000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03061
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03061
>Glyma04g03061.1   sequence type=CDS   gene model=Glyma04g03061   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAATGGAATTGGTGAGCAACCGTTGCGTGGATCTGCATGGTAGGATTGCTGACAAGCGAACAACAGGAGGATGGAAAGCGTCGCACTTTATCATAGTGAACGAGGTGACGGAGAGGTTGGCGTTCTTTGCAATTGCAGTGAACATGGTGGCTTACTTGGTTTTTGAAATGCATCAATCTCTTCCAGACGCTGCTACCCATGTCACAGACTGGATTGGAGCTGCCTATGGGATGATTTTGCTGACACGGGCAAGCCAAGGCCAAACCGCATTCCTATACGGTGCACTTACCCACATTGCTTTGGGCACCGGAGGAATCAAGCCCTGTGTGTCCTCCTTCGTGCAGATGAAGTTCTCTTTCTTAAACTGGTTCTTCTTCGCCATCAACATGGGTGCCATCCTTGGAATCACACCATTGGTTTACATACAAGACGCCGCTGGGTTTGGTTGGGGTTTTGGAATACACGCAGCCGCCGCCATTTGTTCCATCGTTATCCTACTTGCTGGTCTCCGATATTACCGTTTCAAAATGCCAATGGGAAGCCCTTTCACTAGGTTTCTTCAGGTTATGGTAGCCTCCACGATGAATCATCTAAATAGGGTTCATTTAGAAAATGACCAAACTCGTCTCTACGAGGTCGAAACCACTCGCAAGCTTCCTCACACCCCACAATACAGAACGAGAGTAAGTATATTTTATCTTGACACTGACCAATATGGAACTTTTAAGGTTTTTTTCAATACATTACAGAAGACGAGCAATCGATGGCGCATATGTACGGTGACGCAAGTAGAAGAGTTCAAATCCTTCATTCGAGTCCTTCCTGTGTGGGCTTCCACCATTGCTCTCTCCGTGTCCTACGCTCAGCTCTCAACCTTCTTCCTAAGCCAAGCCAACATCATGGACAGAACACTCGGTACCCACTTCAAAATCCCCGCAGGTTCTGTCCCCGTGTTCAGCGCCATCACACTCATCCTCGTACCCATCTACGAGAAATTCATTGTCCCCTCCCTCCGCAACATCATCGGCCACCACCGAGGCGTCACGTCGTTGCAGCGAATGGGCGTAGGTTTATTCGTCTTGATCTTCGCCATGGCCTCGGCAGCGTTGGTGGAAAGGAAAAGACGGGACCACAAGTCATTAAAGATGAGTGTGTTCTGGTTGCTCCCTCAGTTTTTCCTAATGGGTGCTGCTGAGGTTTTCACCTACGTGGGGCAGTTGGAGTTCTTCTACGACGAAGCCACGGATGGGACGAGGAGTTTTTCCTAA
Predicted protein sequences of Glyma04g03061
>Glyma04g03061.1   sequence type=predicted peptide   gene model=Glyma04g03061   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
EMELVSNRCVDLHGRIADKRTTGGWKASHFIIVNEVTERLAFFAIAVNMVAYLVFEMHQSLPDAATHVTDWIGAAYGMILLTRASQGQTAFLYGALTHIALGTGGIKPCVSSFVQMKFSFLNWFFFAINMGAILGITPLVYIQDAAGFGWGFGIHAAAAICSIVILLAGLRYYRFKMPMGSPFTRFLQVMVASTMNHLNRVHLENDQTRLYEVETTRKLPHTPQYRTRVSIFYLDTDQYGTFKVFFNTLQKTSNRWRICTVTQVEEFKSFIRVLPVWASTIALSVSYAQLSTFFLSQANIMDRTLGTHFKIPAGSVPVFSAITLILVPIYEKFIVPSLRNIIGHHRGVTSLQRMGVGLFVLIFAMASAALVERKRRDHKSLKMSVFWLLPQFFLMGAAEVFTYVGQLEFFYDEATDGTRSFS*






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