Glyma04g03000 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g03000

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2177471
stop:	2180083
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75520	AT	Annotation by Michelle Graham. TAIR10: SHI-related sequence 5 \| chr1:28351779-28353179 REVERSE LENGTH=346	SoyBase	E_val: 2.00E-80	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0048438	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral whorl development	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0048467	GO-bp	Annotation by Michelle Graham. GO Biological Process: gynoecium development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05142	PFAM	Domain of unknown function (DUF702)	JGI		ISS
UniRef100_E6NU70	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: JHL18I08.14 protein n=1 Tax=Jatropha curcas RepID=E6NU70_9ROSI	SoyBase	E_val: 6.00E-91	ISS
UniRef100_UPI0002339987	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339987 related cluster n=1 Tax=unknown RepID=UPI0002339987	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03000

Paralog	Evidence	Comments
Glyma06g03030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g027400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03000

Limit To All Plant Sequences

>Glyma04g03000.1   sequence type=CDS   gene model=Glyma04g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTTTCTTCTCTCTAGGTGGGACACAAAACAAGGAAGAAGAGGAAGTAGAAAAAGGAGACAAGAATAACCTATTGCTGTTGAGGAACGAGGAGATCTACAACAACAAGGGTGGGTTCGAGATATGGCCACAGTCGTCGTCGTCGTATCACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACAGGTCGGAGGATGTTTCATTGTGCGTGTCGGAGGATGAGTCTACGAGATTTGGATTAAGTGTGATGAGGACTGGAGGAAGCAGCAGCAGCAGCATGAGCATGAACTGTCAGGACTGTGGGAACCAAGCCAAGAAAGACTGCGCGCATCTTAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACCCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAGCGCCGCGAACGACACCAGCAACTCGCTGAGTTGCAGCTACAACAACAATTCCGTGGAGTAGGAGACAATATTCCTAAACGACATCATCCAGATACTACTACTAGTACTCAACTTGCCTCCGCTCCACAACCCGTTACAGGGTTAGAGCTGGGACAATTCCCAGCTGAAGTGAGCACTTCGGCGTTGTTTCGGTGTGTGAGAGTGAGCGCAGTGGACGCTTCAGATGAACAGTATGCGTATCAAACCTCTGTCAACATCGGAGGACATGTTTTCAAGGGATTTCTCTACGATCAAGGTCCTGAAAGTTCTTACACTGGTGCAGCAGCTGAGGGTTCCTCCGGTGGTGAACCTCAACAACTTGGTTTTATAACCGCCGCCGCAACCACAGCCACAACAAGTGGGAACAGCCCATTTGACCCTTCACTTTACCCAGCTCCGTTGAATGCTTTCATGGCTGGTACGCAATTCTTCCAACCTCCAAGGTCCTAA

Predicted protein sequences of Glyma04g03000

Limit To All Plant Sequences

>Glyma04g03000.1   sequence type=predicted peptide   gene model=Glyma04g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGFFSLGGTQNKEEEEVEKGDKNNLLLLRNEEIYNNKGGFEIWPQSSSSYHLSNYFAFGVGPSRRNRSEDVSLCVSEDESTRFGLSVMRTGGSSSSSMSMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAELQLQQQFRGVGDNIPKRHHPDTTTSTQLASAPQPVTGLELGQFPAEVSTSALFRCVRVSAVDASDEQYAYQTSVNIGGHVFKGFLYDQGPESSYTGAAAEGSSGGEPQQLGFITAAATTATTSGNSPFDPSLYPAPLNAFMAGTQFFQPPRS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain