Glyma04g02970 - SoyBase

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Report for Sequence Feature Glyma04g02970

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2146489
stop:	2152500
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54350	AT	Annotation by Michelle Graham. TAIR10: Forkhead-associated (FHA) domain-containing protein \| chr3:20122298-20126031 REVERSE LENGTH=702	SoyBase	E_val: 4.00E-84	ISS
GO:0006312	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic recombination	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2293	KOG	Daxx-interacting protein MSP58/p78, contains FHA domain	JGI		ISS
PTHR13233	Panther	MICROSPHERULE PROTEIN 1	JGI		ISS
PF00498	PFAM	FHA domain	JGI		ISS
UniRef100_G7J4N3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Microspherule protein n=1 Tax=Medicago truncatula RepID=G7J4N3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A98B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A98B related cluster n=1 Tax=unknown RepID=UPI000233A98B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02970

Paralog	Evidence	Comments
Glyma06g02980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g027100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02970

Limit To All Plant Sequences

>Glyma04g02970.2   sequence type=CDS   gene model=Glyma04g02970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGCTCTCACTTCATTCGCCTCTTGGATTCCCGAGGACGATCTTCTTCTCAAGAACGCCGTTGAGGCTGGTGCTTCATTAGAATCGCTTGCGAAAGGTGCAGTGCAGTTTTCTCGAAAATATAGTCTTAAAGAGATACAGGATCGGTGGTATTCTCTCCTCTATGATCCTGTCATTTCTGCTGAAGCCGCGGCCGGTATGACAAACTTTGAGCTTTCGGCTTCGCCTCTCCCATCAAAGTTCTATAGGTTTGGACACTTGAAAGAACGGAAAGTTGTTTCTGCTACAAGAAAGTCCGAGAGTGTTCGCAATTTGTATTATGCCAGGTGCAAAAGAATCCGCAATAGCATGTTAACTTCCATGGACTTAAGTTTTCTAGTTGATTCGGAAAATGGTAACTATGCAGTGCATGGGAGTGATCCTTTATCTGGAAACTGCATGCCTGAAGGTGGAACTTCTAATCATTTTTCAAGTCTTGATCCTGCTCAGTATGCTTTTCCTGAAAATTTGATGGATGATAATGTTGCTTCTGATAGAGTTGCTGCTGGTGTGTTTTGCCATGGAGTTGACAATGCAGTTGAAGAGAATTTCCCTGTCGAGCTAAAGAGTGTACTTAAGGAAGAACCTCAGATTTTTGAAGACAATGTGCCTTTGGATGGAGTTGTTGAGGATTTGGATGTTCCTAATGAATTGGCTATAGATGGGTGGATTGGAGACGATGGTTTAGAGAGAATGCCTTTGTCCACATTGGATCATATCAACAATGACCCTGGAAATATGTGTCCTGAGTTTGATGAAAACAATGTATTTGATTCAGAGTTAGAGTGTGGAACATCATTTAACTTATCTTCACTTCATGAAATGCCAGTCTGGAGGACAGATGAGAGCATTCAAGAACACAATTTGCCATGTGATGGTTTTAATGATCCTATTGCTTGTGGGGATGCTTATTTGGAAGAACTGTCCAATTCTCTCCTCCACTTCAGTAGCGAGGAAGAACAGATTCTGATGGATGTTGATGGAGATGAAGGGATTGACAAGTCTTACTTTGATGGTCTGACTTCACTACTACAAAATTCTACAAATGATATTAATTCAGATCAGATCTCTAAAAAGGATGAAACAGAGTCGTTAATGGCCTCACAGGCACATGTTATAAATCAGTCAGTTTCATGTCACAAAGAATTGGATGACAACTCGGGGTCAAGCTCTCGTGGTTTACAAGTAGTTCACAAATTAGAGTTCCAAATGTCATCTTCTGTCTCGACTACAGACCCCCAATTTCCTGAACTAATTAATGAAAGTATGCCCTGTTCAATAAACACCGAGCACCAAGAAATTCCAGAAAATGATGACGTTTTTCTACCATTTGATGTGCCTCCTGTCATATTTCCCCCTTCATCTAAATTAATTTTCAAAGTATCCAATAAACCAATTTCTTCATCTGTTATTAAGCATAGAGCTAGTGAAAGAGGTAAAACTTTGATGCATGTAGAAAAGAAAAACCCTGCAGCACCTTATGTATCTTTTCAGATGATGGAATCTCCTTGCTTCCCAGGACCTGTTGGTGGTTCTAAGGTAAAATGTGAGTTGCCTGCTAATCATGCAGCACACACAGTGTCTAGGAGTTCTGTTATTGTTTCTGGTGGCTTAGGTGGAAATGATGCTGCAAACACAACAGATGCTCTTTTGCATGCAAATAAAAAGGAAGAAGCTACCAGCATTTGCTTGGCAAAGGATCCAAGCAATCATGTGGCAAATTCCTTCATGAAGAAATCAGCTGCTGATTCTAAAGACTTCAGAAATCATCCCCAACCTAATGGTTCTAGCATGAAAAATGAACAAGATTTACCCTTGCCACTTCAAGATCACCAGTTGCAACGTGCTGAACTGGGATCCTCAGATGTTCTTGAGTCAGAGCTGGTGGCAAATCCTCCAGCATTAGATGAGGAAGAGCAATATATAGAGAGTGACGATGAGCTTCCTTCTTATTCTGACGTAGAGGCAATGGTACTTGATATGGACCTGGATCCTCATGATCACCAGGATTCTTATTATAATGAGGAAGTATCAAGATATCAACATGTGGAAAGTAAGAGAGCTATCATGAGGCTGGAACAAGGTTCCCATTCTTGTATTCAAAGAGCCATTGATTCACATGGAGCATTTGCCATTTTGTACAGTCGCCACTCAAAGCATTATATTAAGAAACCCGAGGTTTTACTTGGACGAGCAACTGAAAGTGTTCCTGTGGACATTGACTTGGGCAAAGGAGGGCATGGCAATGCAATATCTCGACGTCAGGCAATTATAAAGATGGCTAAAGATGGCACATTCTACATCAAAAACTTTGGCAAGAGTTCAATCCTTGTAAATAGCAAAGAAGTGCACACTGGTCAGTCTCAAAGACTGCATTCCAATTGTCTGGTTGAGGTGAGGGGCATGCCTTTGATATTTGAGATAAATCAAAGTCGTGTGAAGCAGTACCTGGATTACATTTCTGACCATTCTCAGACCTTTTAG

Predicted protein sequences of Glyma04g02970

Limit To All Plant Sequences

>Glyma04g02970.2   sequence type=predicted peptide   gene model=Glyma04g02970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGALTSFASWIPEDDLLLKNAVEAGASLESLAKGAVQFSRKYSLKEIQDRWYSLLYDPVISAEAAAGMTNFELSASPLPSKFYRFGHLKERKVVSATRKSESVRNLYYARCKRIRNSMLTSMDLSFLVDSENGNYAVHGSDPLSGNCMPEGGTSNHFSSLDPAQYAFPENLMDDNVASDRVAAGVFCHGVDNAVEENFPVELKSVLKEEPQIFEDNVPLDGVVEDLDVPNELAIDGWIGDDGLERMPLSTLDHINNDPGNMCPEFDENNVFDSELECGTSFNLSSLHEMPVWRTDESIQEHNLPCDGFNDPIACGDAYLEELSNSLLHFSSEEEQILMDVDGDEGIDKSYFDGLTSLLQNSTNDINSDQISKKDETESLMASQAHVINQSVSCHKELDDNSGSSSRGLQVVHKLEFQMSSSVSTTDPQFPELINESMPCSINTEHQEIPENDDVFLPFDVPPVIFPPSSKLIFKVSNKPISSSVIKHRASERGKTLMHVEKKNPAAPYVSFQMMESPCFPGPVGGSKVKCELPANHAAHTVSRSSVIVSGGLGGNDAANTTDALLHANKKEEATSICLAKDPSNHVANSFMKKSAADSKDFRNHPQPNGSSMKNEQDLPLPLQDHQLQRAELGSSDVLESELVANPPALDEEEQYIESDDELPSYSDVEAMVLDMDLDPHDHQDSYYNEEVSRYQHVESKRAIMRLEQGSHSCIQRAIDSHGAFAILYSRHSKHYIKKPEVLLGRATESVPVDIDLGKGGHGNAISRRQAIIKMAKDGTFYIKNFGKSSILVNSKEVHTGQSQRLHSNCLVEVRGMPLIFEINQSRVKQYLDYISDHSQTF*

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