Glyma04g02900 - SoyBase

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Report for Sequence Feature Glyma04g02900

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2097832
stop:	2102269
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24160	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr4:12539871-12542210 FORWARD LENGTH=418	SoyBase	E_val: 0	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0052542	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition	SoyBase	N/A	ISS
GO:0055088	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid homeostasis	SoyBase	N/A	ISS
GO:0055089	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid homeostasis	SoyBase	N/A	ISS
GO:0055091	GO-bp	Annotation by Michelle Graham. GO Biological Process: phospholipid homeostasis	SoyBase	N/A	ISS
GO:0070328	GO-bp	Annotation by Michelle Graham. GO Biological Process: triglyceride homeostasis	SoyBase	N/A	ISS
GO:0004623	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase A2 activity	SoyBase	N/A	ISS
GO:0016298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0042171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lysophosphatidic acid acyltransferase activity	SoyBase	N/A	ISS
KOG4409	KOG	Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)	JGI		ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF56	Panther	gb def: abhydrolase, alpha/beta hydrolase fold [bacillus anthracis a2012]	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_G7J4P3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-acylglycerol-3-phosphate O-acyltransferase ABHD5 n=1 Tax=Medicago truncatula RepID=G7J4P3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JT54	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT54_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02900

Paralog	Evidence	Comments
Glyma06g02921	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g026500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g02900

Limit To All Plant Sequences

>Glyma04g02900.2   sequence type=transcript   gene model=Glyma04g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGCAGTTGCTCCTCTTTACATGTCTTCTTCATTCTTATATATTCTTTCGTTTCGTTGCCTTCTCAATCATCATTTTAATTTAATTGATTTATTCCGCGTCTATAAGCTTTCTTGTTTTGCTATTGCTTGCTCCGCAATCATAATTTCATCATCGAATCAAATCAATTTTGAAGGTTCATTATAATGGCGGAAGAGATAACCAAGAACGACGTCGGAGTAACCTCCAAAACCACCAGAAGCAGCTCCAGGTTCTGGCCTCGTTGGATTCCCACTTCCACCGATCACATCATCGCTGCCGAGAAGCGCCTTCTTTCCGTCGTCAAGACTGGTTATGTTCAAGAGCATGTTAACATTGGCTCTGGTCCTCCTGGCTCCAAAGTGAGGTGGTTCCGTTCATCCAGCAACGAGCCGCGGTTTATTAACACCGTTACATTTGACAGTAAACCCCATTCTCCAACGCTTGTCATGATTCATGGTTATGCTGCTTCACAGGGGTTCTTTTTTCGCAATTTTGACGCGCTTGCGTCTCGATTTAGAGTCATTGCTGTTGATCAACTTGGATGGGGTGGATCGAGCAGACCTGATTTCACATGCAAAAGCACTGAAGAAACTGAGGCATGGTTTATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACTTGAGCAATTTTATACTGCTCGGACATTCTTTTGGTGGTTATGTTGCTGCCAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTGATTCTGGTTGGATCTGCTGGATTTTCATCTGAATCAGATGCAAAGTCTGAGTGGATAACAAGGTTTCGAGCAACATGGAAGGGGGCAGTTTTGAACCATCTTTGGGAATCAAATTTCACACCTCAGAAACTTGTCAGGGGTTTAGGTCCTTGGGGTCCCAACATAGTCCGCAAGTATACAAGTGCTAGGTTTGGTACACATTCAACTGGGGAAATACTGACTGAAGAGGAATCAACATTGCTGACAGACTATGTTTACCACACATTGGCGGCCAAAGCTAGTGGAGAGCTGTGCTTAAAATATATTTTTTCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCTCAGTGCCTCAGAGTGGAAGGTGCCCACCACTTTCATGTATGGTTTCCAAGACTGGATGAATTATCAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGCGAAATCATCAGGATTCCTCAGGGTGGGCACTTTGCGTTCATTGACAACCCAACTGCCTTCCATTCAGCTGTTTTTTATGCTTGTCGAAGGTTTCTTACACCTGATCCAGACAATGAATCTCTTCCTAAAGGGCTAACCTCTGCATAGGTTAGGTCTTAATTTTGTGCTATTCCTGTCTATATGTATTTTAATATTTTTTTTTACTAATTAAATTTCATAATTGAATGAAATCATATGTATATTGTTTCAGTAAAGTGGAATTTACTGAAAATATTTGTAATAGCAACTTCAACAAAAATCGATTTGTAGGAGAAATTTCTTCCCTGGAAATTGTTCTATTTTAAATCTTGTTGCTCATAAGATATTATGACTTCATTCAACTAATAATTCATGTCGTTTAGGAAAAGTAGTTAGTTATATTAAATTTGTCAATTAATTGTATTGTTACTCCAAATTATTCTTTTATTTTTCTATTCACTTAATTTTTTTTATTAATGTTTGGAGA

Coding sequences of Glyma04g02900

Limit To All Plant Sequences

>Glyma04g02900.1   sequence type=CDS   gene model=Glyma04g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGAGATAACCAAGAACGACGTCGGAGTAACCTCCAAAACCACCAGAAGCAGCTCCAGGTTCTGGCCTCGTTGGATTCCCACTTCCACCGATCACATCATCGCTGCCGAGAAGCGCCTTCTTTCCGTCGTCAAGACTGGTTATGTTCAAGAGCATGTTAACATTGGCTCTGGTCCTCCTGGCTCCAAAGTGAGGTGGTTCCGTTCATCCAGCAACGAGCCGCGGTTTATTAACACCGTTACATTTGACAGTAAACCCCATTCTCCAACGCTTGTCATGATTCATGGTTATGCTGCTTCACAGGGGTTCTTTTTTCGCAATTTTGACGCGCTTGCGTCTCGATTTAGAGTCATTGCTGTTGATCAACTTGGATGGGGTGGATCGAGCAGACCTGATTTCACATGCAAAAGCACTGAAGAAACTGAGGCATGGTTTATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACTTGAGCAATTTTATACTGCTCGGACATTCTTTTGGTGGTTATGTTGCTGCCAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTGATTCTGGTTGGATCTGCTGGATTTTCATCTGAATCAGATGCAAAGTCTGAGTGGATAACAAGGTTTCGAGCAACATGGAAGGGGGCAGTTTTGAACCATCTTTGGGAATCAAATTTCACACCTCAGAAACTTGTCAGGGGTTTAGGTCCTTGGGGTCCCAACATAGTCCGCAAGTATACAAGTGCTAGGTTTGGTACACATTCAACTGGGGAAATACTGACTGAAGAGGAATCAACATTGCTGACAGACTATGTTTACCACACATTGGCGGCCAAAGCTAGTGGAGAGCTGTGCTTAAAATATATTTTTTCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCTCAGTGCCTCAGAGTGGAAGGTGCCCACCACTTTCATGTATGGTTTCCAAGACTGGATGAATTATCAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGCGAAATCATCAGGATTCCTCAGGGTGGGCACTTTGCGTTCATTGACAACCCAACTGCCTTCCATTCAGCTGTTTTTTATGCTTGTCGAAGGTTTCTTACACCTGATCCAGACAATGAATCTCTTCCTAAAGGGCTAACCTCTGCATAG

>Glyma04g02900.2   sequence type=CDS   gene model=Glyma04g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGAGATAACCAAGAACGACGTCGGAGTAACCTCCAAAACCACCAGAAGCAGCTCCAGGTTCTGGCCTCGTTGGATTCCCACTTCCACCGATCACATCATCGCTGCCGAGAAGCGCCTTCTTTCCGTCGTCAAGACTGGTTATGTTCAAGAGCATGTTAACATTGGCTCTGGTCCTCCTGGCTCCAAAGTGAGGTGGTTCCGTTCATCCAGCAACGAGCCGCGGTTTATTAACACCGTTACATTTGACAGTAAACCCCATTCTCCAACGCTTGTCATGATTCATGGTTATGCTGCTTCACAGGGGTTCTTTTTTCGCAATTTTGACGCGCTTGCGTCTCGATTTAGAGTCATTGCTGTTGATCAACTTGGATGGGGTGGATCGAGCAGACCTGATTTCACATGCAAAAGCACTGAAGAAACTGAGGCATGGTTTATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACTTGAGCAATTTTATACTGCTCGGACATTCTTTTGGTGGTTATGTTGCTGCCAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTGATTCTGGTTGGATCTGCTGGATTTTCATCTGAATCAGATGCAAAGTCTGAGTGGATAACAAGGTTTCGAGCAACATGGAAGGGGGCAGTTTTGAACCATCTTTGGGAATCAAATTTCACACCTCAGAAACTTGTCAGGGGTTTAGGTCCTTGGGGTCCCAACATAGTCCGCAAGTATACAAGTGCTAGGTTTGGTACACATTCAACTGGGGAAATACTGACTGAAGAGGAATCAACATTGCTGACAGACTATGTTTACCACACATTGGCGGCCAAAGCTAGTGGAGAGCTGTGCTTAAAATATATTTTTTCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCTCAGTGCCTCAGAGTGGAAGGTGCCCACCACTTTCATGTATGGTTTCCAAGACTGGATGAATTATCAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGCGAAATCATCAGGATTCCTCAGGGTGGGCACTTTGCGTTCATTGACAACCCAACTGCCTTCCATTCAGCTGTTTTTTATGCTTGTCGAAGGTTTCTTACACCTGATCCAGACAATGAATCTCTTCCTAAAGGGCTAACCTCTGCATAG

Predicted protein sequences of Glyma04g02900

Limit To All Plant Sequences

>Glyma04g02900.1   sequence type=predicted peptide   gene model=Glyma04g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEITKNDVGVTSKTTRSSSRFWPRWIPTSTDHIIAAEKRLLSVVKTGYVQEHVNIGSGPPGSKVRWFRSSSNEPRFINTVTFDSKPHSPTLVMIHGYAASQGFFFRNFDALASRFRVIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGSAGFSSESDAKSEWITRFRATWKGAVLNHLWESNFTPQKLVRGLGPWGPNIVRKYTSARFGTHSTGEILTEEESTLLTDYVYHTLAAKASGELCLKYIFSFGAFARMPLLLSASEWKVPTTFMYGFQDWMNYQGAQEARKHMKVPCEIIRIPQGGHFAFIDNPTAFHSAVFYACRRFLTPDPDNESLPKGLTSA*

>Glyma04g02900.2   sequence type=predicted peptide   gene model=Glyma04g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEITKNDVGVTSKTTRSSSRFWPRWIPTSTDHIIAAEKRLLSVVKTGYVQEHVNIGSGPPGSKVRWFRSSSNEPRFINTVTFDSKPHSPTLVMIHGYAASQGFFFRNFDALASRFRVIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGSAGFSSESDAKSEWITRFRATWKGAVLNHLWESNFTPQKLVRGLGPWGPNIVRKYTSARFGTHSTGEILTEEESTLLTDYVYHTLAAKASGELCLKYIFSFGAFARMPLLLSASEWKVPTTFMYGFQDWMNYQGAQEARKHMKVPCEIIRIPQGGHFAFIDNPTAFHSAVFYACRRFLTPDPDNESLPKGLTSA*

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