Glyma04g02880 - SoyBase

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Report for Sequence Feature Glyma04g02880

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2082594
stop:	2084666
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75620	AT	Annotation by Michelle Graham. TAIR10: glyoxal oxidase-related protein \| chr1:28394951-28396594 REVERSE LENGTH=547	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07250	PFAM	Glyoxal oxidase N-terminus	JGI		ISS
PF09118	PFAM	Domain of unknown function (DUF1929)	JGI		ISS
UniRef100_G9JJS5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Galactose oxidase n=1 Tax=Ziziphus jujuba RepID=G9JJS5_ZIZJJ	SoyBase	E_val: 0	ISS
UniRef100_I1JT53	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JT53_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02880

Paralog	Evidence	Comments
Glyma06g02900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g026400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02880

Limit To All Plant Sequences

>Glyma04g02880.1   sequence type=CDS   gene model=Glyma04g02880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACTCCTCCTGCTCCTTATTCTCCTCTTTCACGCGGCGGAAGCCAAGGGACAGTGGCAGCTCCTCCACAAAAACATCGGCATTGTCGCCATGCACATGCAGCTTCTCCACAACGACCGCGTCATCATCTTCGACCGCACCGACTTCGGACTCTCCAACCTAACCCTCCCCGACGGAAGATGCCGCAACAACCCAAACGAGTTGGTCGTCAAACGCGACTGCACCGCGCACTCCATCGAATACGACGTCGCAGCCAACACATTCCGCGCTCTCTTTGTCCAAACCAATGTCTGGTGCTCCTCCGGTTCGGTCTCTCCCGACGGAACATTAGTCCAAACCGGTGGCTTCAACGACGGCTACCGTGCGGTCAGAACCTTCACCCCGTGCCGCTCGTGCGACTGGGCAGAAGTTCAGCATGGACTCGCGGCGCAGAGATGGTACGCCACCAATCACATCTTGCCAGATGGACGTCAAATAATTATCGGAGGAAGAAGACAATTCAACTACGAGTTTTACCCCAAGACACAAGCCAAGAATACTTACAGTTTACCTTTTCTTGCTCAAACCAACGACGCTAACGCTGAAAACAATCTCTACCCGTTTGTTTTTCTAAACGTCGATGGCAACCTTTTTATCTTTGCCAACAACCGCGCTATCTTGTTCGATTACAATAAGAACAGTGTCGTGAGAACCTACCCTCAAATACCCGGTGGAGATCCACGGTGTTATCCTAGCACCGGTTCCGCAGTTTTGCTTCCTCTTCGAGAACCTAATGTGGAGGCTGAGGTTCTGATTTGTGGTGGAGCCCCGAGAGGGGCTTTTCGGAATACTCTCTCGGGTAAGTTTGTTGGAGCGTTGAGAACTTGCGCTCGGATTAAAATAACCGACCCGAAAGCGAATTGGGTGATGGAAACCATGCCGGGTGCGAGAGTTATGAGTGACATGGTTTTACTCCCCAACGGCGACGTTTTGATTGTTAATGGAGCAGCTGTGGGGACTGCGGGCTGGGAATTGGGCCGTAACCCGGTGTTAAACCCGTTTCTTTATAAACCCAACAAGCGGGTCGGGATGAGATTTGAGGTCCAGAACCCGTCTCATATTCCGAGGATGTACCACTCCGGTGCCGTTTTGCTTCGCGATGGGCGAGTTCTTCTCGCTGGGAGCAACCCTCACACGTATTACAATTTCACCAAAGTGTTGTTTCCAACGGAACTGCGGTTAGAAGCGTTTTCTCCTTGGTATCTTGAGCCCGGATTCTCTAACGTGCGTCCCGCAATAGTATCTCCTGCGTCCCAAACAAAACTCAAGTACGGTCAGACGTTGAGGCTTCGGTTTAAGGTGAGCGCGACTTTGGTTGGGGATTCGGTGTCTGTTACCATGCTGGCGCCGCCATTTAACACGCACTCGTTCTCCATGAATCAGAGGCTGTTGGTGCTGAAGCCGCACCATTTGAGTGGGGTTGGAGAATCAACGCACGAGGTTGAAGTTACCGCGCCGGCTTCCGCTGTTCTTGCGCCACCGGGTTTCTATCTGCTGTTTGTGGTCCATCAAGAAGTTCCAAGCCACGGTATTTGGGTCCAGATGGTGTGA

Predicted protein sequences of Glyma04g02880

Limit To All Plant Sequences

>Glyma04g02880.1   sequence type=predicted peptide   gene model=Glyma04g02880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLLLLLILLFHAAEAKGQWQLLHKNIGIVAMHMQLLHNDRVIIFDRTDFGLSNLTLPDGRCRNNPNELVVKRDCTAHSIEYDVAANTFRALFVQTNVWCSSGSVSPDGTLVQTGGFNDGYRAVRTFTPCRSCDWAEVQHGLAAQRWYATNHILPDGRQIIIGGRRQFNYEFYPKTQAKNTYSLPFLAQTNDANAENNLYPFVFLNVDGNLFIFANNRAILFDYNKNSVVRTYPQIPGGDPRCYPSTGSAVLLPLREPNVEAEVLICGGAPRGAFRNTLSGKFVGALRTCARIKITDPKANWVMETMPGARVMSDMVLLPNGDVLIVNGAAVGTAGWELGRNPVLNPFLYKPNKRVGMRFEVQNPSHIPRMYHSGAVLLRDGRVLLAGSNPHTYYNFTKVLFPTELRLEAFSPWYLEPGFSNVRPAIVSPASQTKLKYGQTLRLRFKVSATLVGDSVSVTMLAPPFNTHSFSMNQRLLVLKPHHLSGVGESTHEVEVTAPASAVLAPPGFYLLFVVHQEVPSHGIWVQMV*

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