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Report for Sequence Feature Glyma04g02820

Feature Type:gene_model
Chromosome:Gm04
Start:2025834
stop:2029032
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g02820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19860AT Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:6891654-6894400 REVERSE LENGTH=413 SoyBaseE_val: 3.00E-95ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23102Panther ZINC FINGER (CLIPPER)-RELATED JGI ISS
PTHR23102:SF17Panther ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN JGI ISS
UniRef100_G7I2D9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7I2D9_MEDTR SoyBaseE_val: 5.00E-171ISS
UniRef100_I1JT47UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT47_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g02820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02820
ParalogEvidenceComments
Glyma06g02830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g025900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g02820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g02820
>Glyma04g02820.1   sequence type=CDS   gene model=Glyma04g02820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCCGATTGCAAACATTGAAACAAGTTTCATGGGCCTCCGATTTAGATCTTTGTCAGGTTAGGCTATTCTTATCAGAGGAATCTCCTTCACAGGTTGGGTTAAATTCTCAAGATAACCTCCAAGCAAAAACATCATTGTCGTTGCGTCCAGGTGGAGCAGGTTCTGATGACATTCTGCCTCCTGGATTTGAGGGAACTCATGCTTCAAGTCAGTTTGAGATTAAGCCATCCCAGATACCAGTTATTAAGTGGATTACTCCTCAAAAGATTGTTCTAAATGTCACATGGCGGGTAGTGTCTGGGGAAGAAAGCAAAGAAGCAGAGGATCAATGTCAGAGGGAGATGAGAGTACTGGAAGCTATTTATCCTCGCATATCTTCCATTCCTCTAAACCCTTCTGTTTCAATGGATGTTGAAGAGTTCCATTGCATTGATGGTCAAACTACTTTGATACCAATAACGCCAGTTGAAGATGAAGATGCAGCAGCAGAAACATTATCGTATTCCTTGGAACCATTTCATGTTTCCCAATCTCTTCAATTAGCTTCTGGTGTTCTGAAGGATTCAAACTCTGCTACAAGTATGCAGTTAGCTTGTGGTCTTGCATCTGATGTAGCTGTTGCTGCATCTGTTGCTTTAACTAACCTTGTGAAGAGCAATGAACATGGAAATTTTGTTGACCATGAATTACTTAATAATATTCTCAACAATCCAGAAGTGATTGAGAAGTTGGTTGGAGATTATGGAGCTATTAATAATTCACAATATGTACATAATGCGGGGTCATCCTTGGCGGCTTTTTCAAATCCTCCTATTCCTATTCAAGGACAAACCACTACACCTTCATCGGTTGTTTTTTCAACTACTTCTTCCTATACTCCCCCTATTGGAGGTCAGGCGGAACCTGTTACTACCCAATGGCCTCCTAGGCCTGCAGTGAGTTCAGCTATTGTTTCTTCTCCCATTGAGGTCCCTCCTGCAAGAGATGTAAACTACTATAAGAGCTTAATTCAACAACATGGAGGACATAAAGAAACACTTCCATACTCCAGTAAACGTCAGATTCCTCAGGCAGCAACAAACTATGAGACAACCTCCTACAATCATAGAGGTAAAGTGTCAAAACCAAAGATAATGAAGCCTTGTATCTTTTTCAACAGTTCTAGAGGATGTCGGAATGGAGCTAACTGTGCCTACCAGCATGATGCATCATTTCAGCCACGGGGTAATACTGTGTCAGGGATACAAAGTTCAAAGAGGATGAAAATGGATCATGAGATTAGCAATTAA
Predicted protein sequences of Glyma04g02820
>Glyma04g02820.1   sequence type=predicted peptide   gene model=Glyma04g02820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRLQTLKQVSWASDLDLCQVRLFLSEESPSQVGLNSQDNLQAKTSLSLRPGGAGSDDILPPGFEGTHASSQFEIKPSQIPVIKWITPQKIVLNVTWRVVSGEESKEAEDQCQREMRVLEAIYPRISSIPLNPSVSMDVEEFHCIDGQTTLIPITPVEDEDAAAETLSYSLEPFHVSQSLQLASGVLKDSNSATSMQLACGLASDVAVAASVALTNLVKSNEHGNFVDHELLNNILNNPEVIEKLVGDYGAINNSQYVHNAGSSLAAFSNPPIPIQGQTTTPSSVVFSTTSSYTPPIGGQAEPVTTQWPPRPAVSSAIVSSPIEVPPARDVNYYKSLIQQHGGHKETLPYSSKRQIPQAATNYETTSYNHRGKVSKPKIMKPCIFFNSSRGCRNGANCAYQHDASFQPRGNTVSGIQSSKRMKMDHEISN*






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