SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g02810

Feature Type:gene_model
Chromosome:Gm04
Start:2021236
stop:2022902
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g02810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39600AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:15854188-15854771 REVERSE LENGTH=127 SoyBaseE_val: 2.00E-67ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1JT46UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT46_SOYBN SoyBaseE_val: 1.00E-87ISS
UniRef100_I6LNS8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial 39S ribosomal protein L53 n=1 Tax=Hevea brasiliensis RepID=I6LNS8_HEVBR SoyBaseE_val: 3.00E-52ISS

Expression Patterns of Glyma04g02810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02810
ParalogEvidenceComments
Glyma06g02820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g025800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g02810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g02810
>Glyma04g02810.1   sequence type=CDS   gene model=Glyma04g02810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAAGTTCTTGTCGAGAGTGAAAATCGAGTTCAACGCGTTGGACCCGCGAACGGCATCGTGTATAGAGTTTCTGGCGCAATGCAATTCACGGAGGGCGAAGGAGTCGAACCCGACGTGCGAAGTGGACGTGAAGCGCGTGAGGGAAGAGCGCGCGCCGCAGATAACGGTGACATTCGTTAACGGCGTCGAGGAAGTGTTCGACGCGACGGCGACGCCGGCTCAGAGCATAAGAAACTTGATTCTGGAAAAGGGTCAGCACCTCGAGACGGAGCAGATGTTTCGCGAAGCAGGGGAACCCTGGCCGGTTATCATCCCCGACGAGGAGCTCTCCCAAATCGCACTCCCTACCAAACCAAGGAAAGCGGAAGACAAGAAGCAATAG
Predicted protein sequences of Glyma04g02810
>Glyma04g02810.1   sequence type=predicted peptide   gene model=Glyma04g02810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKFLSRVKIEFNALDPRTASCIEFLAQCNSRRAKESNPTCEVDVKRVREERAPQITVTFVNGVEEVFDATATPAQSIRNLILEKGQHLETEQMFREAGEPWPVIIPDEELSQIALPTKPRKAEDKKQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo