Glyma04g02800 - SoyBase

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Report for Sequence Feature Glyma04g02800

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2017942
stop:	2019842
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G27230	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:10054224-10055456 FORWARD LENGTH=410	SoyBase	E_val: 0	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF434	Panther		JGI		ISS
PF03141	PFAM	Putative methyltransferase	JGI		ISS
UniRef100_B9R864	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATRAD3, putative n=1 Tax=Ricinus communis RepID=B9R864_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JT45	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT45_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g02800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g025700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02800

Limit To All Plant Sequences

>Glyma04g02800.1   sequence type=CDS   gene model=Glyma04g02800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCGTGTCTCTGAAAATAGGCGACGGAACCGCCAGATTCAGAAGAGCAACAGTGTGTTCCTCCGCAGTTAACATTCTCATGATATTCTCCGTCATCACCACCAACCTCTTCGCCCTCTACGCCTTCTCTTCTTCCCCAAAAGACCCTCACTCCCACCTTCACCTTCTTGACAAAAACTTCTCCCTCATCTCTGAGCAGGTCACCCTCATTCTCCGAGAGATCGATATGTCTCAGAAGAAACTTGCCCAAATAGAAAAAGACCTTCTCGGCTACGAAAGCCTCGACCTTTCTCGACCCAACATTGCAAACGAGCTCAAACTCTTCCTCCACCACCACCAGCTCCCTCTAGGCAAAGACTCCAAATCCGGAATCACCGAAATGGTCTCATCCGTCGGCCATTCCTGCGAAAAATCCTCGGACTTGTTGTCTCAGTACATGAGTTACAAGGCTTTTGGACCCTGCCCCAATGATTGGAGCGTGGCACAGAAACTCATTTTAAAAGGGTGTGAGCCTTTACCAAGAAGAAGGTGCTTTGCTAAAACAATTTCTAAGGTGGGTCTTCTTCACCCTTTTCCCACCTCGCTTTGGAAAGCTCCAGTCAACAACACTGTTAACTGGAGTGGTTTAGGTTGCAAGAATTTTGAGTGTTTGAAGGGTAAGAAGTTGAGTAGAGATTGCATTGGTTGCTTTGATTTGGTTAATGGGTATGAGAATCAAAGGTTTGTGAAGTCTAGGAGTAAGAATGATTTTCTAATTGATGATGTTTTGGCATTGGGAAGTGGTGGAATTCGGATTGGACTTGATGTTGGAGGCGGGTCTGGGTCCTTTGCTGCTGTTATGGCCGAGAGGAATGTTACTGTGGTTACTAGCACTTTGAATGTTGATGCTCCCTTCAGTGAATTCATTGCTGCAAGAGGACTTTTCCCTCTTTTCTTGAGCTTGGATCATAGGTTCCCGTTTTATGACAATGCGTTTGATTTGGTTCGGGCTTCGAGTGGATTGGATGGTGGAGGGAGGGAAGAGAAGTTGGAGTTTTTGATGTTTGATATCGATCGTGTTTTGCGGGCTGGTGGTTTGTTTTGGCTGGATAACTTCTATTGTGTTGATGAAGAGAAGAAGAGGGCGTTGACTAGGTTGATTGAACGATTTGGGTACAAAAAGTTGAAGTGGGTTGTGGGAGAGAAGGCTGATATTCTTGGATCAGGTAAGTCTCAGGTTGTTTTATCAGCTGTGCTTGAGAAGCCTGTAAGGGTCTAG

Predicted protein sequences of Glyma04g02800

Limit To All Plant Sequences

>Glyma04g02800.1   sequence type=predicted peptide   gene model=Glyma04g02800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVSLKIGDGTARFRRATVCSSAVNILMIFSVITTNLFALYAFSSSPKDPHSHLHLLDKNFSLISEQVTLILREIDMSQKKLAQIEKDLLGYESLDLSRPNIANELKLFLHHHQLPLGKDSKSGITEMVSSVGHSCEKSSDLLSQYMSYKAFGPCPNDWSVAQKLILKGCEPLPRRRCFAKTISKVGLLHPFPTSLWKAPVNNTVNWSGLGCKNFECLKGKKLSRDCIGCFDLVNGYENQRFVKSRSKNDFLIDDVLALGSGGIRIGLDVGGGSGSFAAVMAERNVTVVTSTLNVDAPFSEFIAARGLFPLFLSLDHRFPFYDNAFDLVRASSGLDGGGREEKLEFLMFDIDRVLRAGGLFWLDNFYCVDEEKKRALTRLIERFGYKKLKWVVGEKADILGSGKSQVVLSAVLEKPVRV*

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