Glyma04g02780 - SoyBase

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Report for Sequence Feature Glyma04g02780

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2005716
stop:	2006102
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75590	AT	Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family \| chr1:28383250-28383714 REVERSE LENGTH=154	SoyBase	E_val: 2.00E-51	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02519	PFAM	Auxin responsive protein	JGI		ISS
UniRef100_B9R868	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 6B, putative n=1 Tax=Ricinus communis RepID=B9R868_RICCO	SoyBase	E_val: 2.00E-60	ISS
UniRef100_UPI000189D08C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D08C related cluster n=1 Tax=unknown RepID=UPI000189D08C	SoyBase	E_val: 6.00E-89	ISS

Expression Patterns of Glyma04g02780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02780

Paralog	Evidence	Comments
Glyma06g02810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g025500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02780

Limit To All Plant Sequences

>Glyma04g02780.1   sequence type=CDS   gene model=Glyma04g02780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGCGGCACTTGGAAAATGCAGCAGAATCCGCCACATAGTCAGGCTCCGCCAAATGCTGCGGCGGTGGCGTAGCAAGGCCCGTACGTCGGCCCACAGAATACCGTCTGATGTTCCAGCGGGACACGTGGCGGTGTGCGTGGGCAACAACTCGAAAAGATTTGTGGTGCGCACGACGTACCTGAACCATCCCGTGTTCAAGAGGCTACTGGTTGAGGCGGAGGAAGAGTACGGCTTCTCCAACCACGGTCCTCTCGCCATTCCCTGCGACGAAGCGATCTTCGAACAGCTCCTCCGCTTCGTTTCACACTCCGATGACTGCCACGTGCCTCTCAGAAACAACCTCGACTTCTACCTTGAATCTCGACCACTACTCCTCCACTGA

Predicted protein sequences of Glyma04g02780

Limit To All Plant Sequences

>Glyma04g02780.1   sequence type=predicted peptide   gene model=Glyma04g02780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAALGKCSRIRHIVRLRQMLRRWRSKARTSAHRIPSDVPAGHVAVCVGNNSKRFVVRTTYLNHPVFKRLLVEAEEEYGFSNHGPLAIPCDEAIFEQLLRFVSHSDDCHVPLRNNLDFYLESRPLLLH*

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