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Report for Sequence Feature Glyma04g02750

Feature Type:gene_model
Chromosome:Gm04
Start:1948392
stop:1951586
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g02750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37210AT Annotation by Michelle Graham. TAIR10: lysine decarboxylase family protein | chr2:15624253-15626834 REVERSE LENGTH=215 SoyBaseE_val: 2.00E-112ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03641PFAM Possible lysine decarboxylase JGI ISS
UniRef100_G7J4P9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Carboxy-lyase n=1 Tax=Medicago truncatula RepID=G7J4P9_MEDTR SoyBaseE_val: 6.00E-149ISS
UniRef100_I1JT41UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT41_SOYBN SoyBaseE_val: 1.00E-162ISS

Expression Patterns of Glyma04g02750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02750
ParalogEvidenceComments
Glyma06g02770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g025100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g02750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g02750
>Glyma04g02750.1   sequence type=CDS   gene model=Glyma04g02750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACTCAACACCAACAACCCACCATCAAGTCTAGGTTCAGACGCATCTGTGTCTACTGTGGTAGCAGCCCTGGCAAAAACCCTAGCTATCAGCTCGCTGCTATTCAGCTCGGAAAACAACTGGTGGAGAGGAACATTGACTTGGTTTATGGAGGGGGAAGCATAGGGTTGATGGGTCTAATCTCACAAGTTGTGTATGATGGTGGACGCCACGTGTTAGGGGTGATTCCAAAGACTCTTAATGCAAAAGAGATAACTGGAGAGAGTGTTGGAGAAGTGAGAGCTGTATCGGGCATGCACCAACGCAAAGCCGAAATGGCCCGACAAGCCGATGCATTTATTGCACTGCCAGGTGGATATGGCACCCTTGAAGAACTACTGGAAATTATCACCTGGGCTCAACTAGGTATCCATGATAAACCGGTGGGGTTGTTGAACGTGGATGGGTACTACAACTCGCTGCTGGCATTCATGGACAAAGCTGTGGACGAAGGTTTCGTAACACCAGCTGCCCGTCACATTATTGTTTCTGCCCACACTGCCCAAGATCTCATGTGCAAACTTGAGGAATATGTCCCCGAGCACTGTGGTGTTGCCCCCAAACTAAGTTGGGAGATGGAGCAACAGTTAGTTAACACTGCAAAGTCAGATATTTCCCGTTGA
Predicted protein sequences of Glyma04g02750
>Glyma04g02750.1   sequence type=predicted peptide   gene model=Glyma04g02750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METQHQQPTIKSRFRRICVYCGSSPGKNPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLISQVVYDGGRHVLGVIPKTLNAKEITGESVGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEIITWAQLGIHDKPVGLLNVDGYYNSLLAFMDKAVDEGFVTPAARHIIVSAHTAQDLMCKLEEYVPEHCGVAPKLSWEMEQQLVNTAKSDISR*






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