Glyma04g02730 - SoyBase

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Report for Sequence Feature Glyma04g02730

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1925457
stop:	1928355
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42560	AT	Annotation by Michelle Graham. TAIR10: Abscisic acid-responsive (TB2/DP1, HVA22) family protein \| chr5:17015573-17016969 FORWARD LENGTH=296	SoyBase	E_val: 3.00E-108	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009755	GO-bp	Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1726	KOG	HVA22/DP1 gene product-related proteins	JGI		ISS
PTHR12300	Panther	HVA22-LIKE PROTEINS	JGI		ISS
PTHR12300:SF20	Panther	HVA22-LIKE PROTEIN	JGI		ISS
PF03134	PFAM	TB2/DP1, HVA22 family	JGI		ISS
UniRef100_G7J4Q8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HVA22-like protein i n=1 Tax=Medicago truncatula RepID=G7J4Q8_MEDTR	SoyBase	E_val: 2.00E-145	ISS
UniRef100_I1JT40	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT40_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02730

Paralog	Evidence	Comments
Glyma06g02750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g024900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02730

Limit To All Plant Sequences

>Glyma04g02730.1   sequence type=CDS   gene model=Glyma04g02730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGGATCTTTTATTACAAGGGCACTTGTGATGGTTTTTGGCTATGCCTTCCCTGCCTATGAATGCTATAAAGCAGTTGAAAAGAATAGGCCAGAAATTGAACAACTTCGTTTTTGGTGCCAGTACTGGATTTTGGTAGCTGTTTTGTCAGTATGTGAGCGGATTGCTGATGCTTTTATATCATGGGTCCCAATGTATAGTGAAGCTAAGTTGGCATTTGTCATATACTTGTGGTACCCGAAAACAAAGGGAACAACATATGTGTATGATTCCTTCTTTAGACCATATGTTGCGAAACATGAGACAGAAATTGACCGCAACTTGTTGGAACTAAGGACAAGGGCAGGAGATACTGCAGTTTTGTATTGGCAAAAAGCTGCTAGTTATGGCCAGACTAGAATATTTGAAATTTTGCAGTATGTTGCTGCACAGTCAACACCTTCGCCACGCCCTGCTCAGCAACAACCAGCTATGAGGGTGCGTCAAGCCGCAACTAGTAATAGCCAACCAGCATCTGCGACAGAACCACAAGCTGAGAATCCATCTTCTCCTACTTCTAGTTCATCCAGTCAGCAACAGAAGGAAGTAGCAGAGGAGGAGTTGGGTTCTTCACAAGTGCCTAAAGCACCTTATACTGTAGCAGGTTTAAGTAGCCAGAAGTCTAATCCTATACCTGAAACGGCCAATCAATCGGTACCTGAAGAGGATGAGCCAATGCAGATTGAAGCAGCAGCACCTTCATCCTCTTCTGCAAATGAAAATGAGAACCCTCCCTTGGAAGATACAATAATGGAAGAAAGCATTAGGGTAACGCGTGGTAGACTAAGAAAAAATCGATCAGCTCGAATCCGTTAG

Predicted protein sequences of Glyma04g02730

Limit To All Plant Sequences

>Glyma04g02730.1   sequence type=predicted peptide   gene model=Glyma04g02730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIGSFITRALVMVFGYAFPAYECYKAVEKNRPEIEQLRFWCQYWILVAVLSVCERIADAFISWVPMYSEAKLAFVIYLWYPKTKGTTYVYDSFFRPYVAKHETEIDRNLLELRTRAGDTAVLYWQKAASYGQTRIFEILQYVAAQSTPSPRPAQQQPAMRVRQAATSNSQPASATEPQAENPSSPTSSSSSQQQKEVAEEELGSSQVPKAPYTVAGLSSQKSNPIPETANQSVPEEDEPMQIEAAAPSSSSANENENPPLEDTIMEESIRVTRGRLRKNRSARIR*

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