Glyma04g02720 - SoyBase

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Report for Sequence Feature Glyma04g02720

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1917338
stop:	1921216
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47870	AT	Annotation by Michelle Graham. TAIR10: winged-helix DNA-binding transcription factor family protein \| chr1:17634937-17637557 FORWARD LENGTH=395	SoyBase	E_val: 2.00E-89	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006302	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0051302	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell division	SoyBase	N/A	ISS
GO:0051782	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cell division	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005667	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: transcription factor complex	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
PTHR12081	Panther	E2F	JGI		ISS
PTHR12081:SF18	Panther	E2F4,5	JGI		ISS
PF02319	PFAM	E2F/DP family winged-helix DNA-binding domain	JGI		ISS
UniRef100_G7J4Q9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor E2F5 n=1 Tax=Medicago truncatula RepID=G7J4Q9_MEDTR	SoyBase	E_val: 2.00E-140	ISS
UniRef100_I1JT39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT39_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02720

Paralog	Evidence	Comments
Glyma06g02738	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g024800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g02720

Limit To All Plant Sequences

>Glyma04g02720.4   sequence type=transcript   gene model=Glyma04g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGCGGCCACACCACATCACTTTTCATTTTCTATTGCTATTGCTATATAACAGTGTTACTGTTACCATTATTACCCTTCTCGAGTATCAGTGTGTTCATGTCCACTACGGCCCAAGATCAATCCCATCCCCATTCAAATTCCAGCTATTGCTTTCTCCTTCCCTCACAGTGACTTCTCTTCTCTCTTTTCTGCTTTTCTTCTTATTTCAATGACATACATTATCGGATCATTTCCCCCCATTCCAATTATCAAATCTCATCATATCATTGCTTGATTTATTCTTCACAATCTTAACCACATCTGCTAGTTGCTTTTATCTTCTCTGCTCTAATTATCAATTCTACAAAAAATTATTTTAATTACACGCGCCGAGTTGGATTTGTAGAGTTTTGTTAGGGCACTAGCATTCCAAGGTCAAATATTTGAAAATATAGTTTGTCAGCAAATCTTGGCTCTTGTAAATAAGGCACTTCCCTTATGCTTTAAATGTTTGTATTCAACTATCTGTGCAGATGGGTCAAAGATATGAAAACAATGTTTTCAAGTCTCACATAAGTAATATTGAAGCTGCTCCCGGTATGACCCAAACAGTTCATCTTCCTCCCCCACTTCAAACCGACCCTACCATAAGAGGAAAGCAAAATGGTAAACCAAAAGGTTCAAGAAATGCAAAATCTGCGGCTCACAGACCTTATGCCGATTCCACTAATTCGACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACCCTGGATCTAAATAGAACCGCTGAAATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGACTGATAGAGAAAACATCAAAGAATCATATAAAGTGGAAGGGATGTGATGGGCTTGGACCTCGAGAACTGGAAGACCAAGTTAATAGTTTAAAGGCTGAAGTTGATAGTCTATATGCCGAGGAATGCAAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGTGAAAGCTCTCAAAAGTACCTCTTTATAACCAAGGAAGATATTCTTGGCCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTCCATCGAGGTTCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACCACAAGTTTGAGGATGATAGTGCCAAACCGATGAAATTAACAAATCCATCATGGAATAGTGATCTCTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAAAATGATGAAAATAATCCTTCTGAGCGTTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACTGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGTGGGGGAAGGAGTAGTTGGTTCTGATAGACGTGCTTCAGACGATTAATCCAATAAGAGGTGCGGGATTTGCTTGAACACAAGCTTCACTAACAGATACGATTAATAAGAGATAGACTGTTAATTGTTCCAGATGACACAAAGGATACATTTCAAACTGTAAATTTTGGCTCCTTTTTTTGGCTTTTTTTTCTATCAGCAGTTGCCTTAACTAGGATAATTGTGTCCTAGTTCAACAATGTAACTTACGAATAAGATTGAGATATAACTTTTAAATAGAAGTGTCTCAAATCTATTATAGCTTTACATAGATAAAGATATAACCAAGGGTCTAAGTTAGTTGTTTCAACATAGTGCATAAGTTATTATAACTTTTGTATCTGTCTTTGATTGATTTGATAAAAAAA

>Glyma04g02720.5   sequence type=transcript   gene model=Glyma04g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGCGGCCACACCACATCACTTTTCATTTTCTATTGCTATTGCTATATAACAGTGTTACTGTTACCATTATTACCCTTCTCGAGTATCAGTGTGTTCATGTCCACTACGGCCCAAGATCAATCCCATCCCCATTCAAATTCCAGCTATTGCTTTCTCCTTCCCTCACAATGGGTCAAAGATATGAAAACAATGTTTTCAAGTCTCACATAAGTAATATTGAAGCTGCTCCCGGTATGACCCAAACAGTTCATCTTCCTCCCCCACTTCAAACCGACCCTACCATAAGAGGAAAGCAAAATGGTAAACCAAAAGGTTCAAGAAATGCAAAATCTGCGGCTCACAGACCTTATGCCGATTCCACTAATTCGACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACCCTGGATCTAAATAGAACCGCTGAAATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGACTGATAGAGAAAACATCAAAGAATCATATAAAGTGGAAGGGATGTGATGGGCTTGGACCTCGAGAACTGGAAGACCAAGTTAATAGTTTAAAGGCTGAAGTTGATAGTCTATATGCCGAGGAATGCAAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGTGAAAGCTCTCAAAAGTACCTCTTTATAACCAAGGAAGATATTCTTGGCCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTCCATCGAGGTTCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACCACAAGTTTGAGGATGATAGTGCCAAACCGATGAAATTAACAAATCCATCATGGAATAGTGATCTCTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAAAATGATGAAAATAATCCTTCTGAGCGTTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACTGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGTGGGGGAAGGAGTAGTTGGTTCTGATAGACGTGCTTCAGACGATTAATCCAATAAGAGGTGCGGGATTTGCTTGAACACAAGCTTCACTAACAGATACGATTAATAAGAGATAGACTGTTAATTGTTCCAGATGACACAAAGGATACATTTCAAACTGTAAATTTTGGCTCCTTTTTTTGGCTTTTTTTTCTATCAGCAGTTGCCTTAACTAGGATAATTGTGTCCTAGTTCAACAATGTAACTTACGAATAAGATTGAGATATAACTTTTAAATAGAAGTGTCTCAAATCTATTATAGCTTTACATAGATAAAGATATAACCAAGGGTCTAAGTTAGTTGTTTCAACATAGTGCATAAGTTATTATAACTTTTGTATCTGTCTTTGATTGATTTGATAAAAAAA

Coding sequences of Glyma04g02720

Limit To All Plant Sequences

>Glyma04g02720.3   sequence type=CDS   gene model=Glyma04g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCAAAGATATGAAAACAATGTTTTCAAGTCTCACATAAGTAATATTGAAGCTGCTCCCGGTATGACCCAAACAGTTCATCTTCCTCCCCCACTTCAAACCGACCCTACCATAAGAGGAAAGCAAAATGGTAAACCAAAAGGTTCAAGAAATGCAAAATCTGCGGCTCACAGACCTTATGCCGATTCCACTAATTCGACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACCCTGGATCTAAATAGAACCGCTGAAATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGACTGATAGAGAAAACATCAAAGAATCATATAAAGTGGAAGGGATGTGATGGGCTTGGACCTCGAGAACTGGAAGACCAAGTTAATAGTTTAAAGGCTGAAGTTGATAGTCTATATGCCGAGGAATGCAAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGTGAAAGCTCTCAAAAGTACCTCTTTATAACCAAGGAAGATATTCTTGGCCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTCCATCGAGGTTCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACCACAAGTTTGAGGATGATAGTGCCAAACCGATGAAATTAACAAATCCATCATGGAATAGTGATCTCTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAAAATGATGAAAATAATCCTTCTGAGCGTTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACTGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGTGGGGGAAGGAGTAG

>Glyma04g02720.4   sequence type=CDS   gene model=Glyma04g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCAAAGATATGAAAACAATGTTTTCAAGTCTCACATAAGTAATATTGAAGCTGCTCCCGGTATGACCCAAACAGTTCATCTTCCTCCCCCACTTCAAACCGACCCTACCATAAGAGGAAAGCAAAATGGTAAACCAAAAGGTTCAAGAAATGCAAAATCTGCGGCTCACAGACCTTATGCCGATTCCACTAATTCGACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACCCTGGATCTAAATAGAACCGCTGAAATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGACTGATAGAGAAAACATCAAAGAATCATATAAAGTGGAAGGGATGTGATGGGCTTGGACCTCGAGAACTGGAAGACCAAGTTAATAGTTTAAAGGCTGAAGTTGATAGTCTATATGCCGAGGAATGCAAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGTGAAAGCTCTCAAAAGTACCTCTTTATAACCAAGGAAGATATTCTTGGCCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTCCATCGAGGTTCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACCACAAGTTTGAGGATGATAGTGCCAAACCGATGAAATTAACAAATCCATCATGGAATAGTGATCTCTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAAAATGATGAAAATAATCCTTCTGAGCGTTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACTGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGTGGGGGAAGGAGTAG

>Glyma04g02720.5   sequence type=CDS   gene model=Glyma04g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCAAAGATATGAAAACAATGTTTTCAAGTCTCACATAAGTAATATTGAAGCTGCTCCCGGTATGACCCAAACAGTTCATCTTCCTCCCCCACTTCAAACCGACCCTACCATAAGAGGAAAGCAAAATGGTAAACCAAAAGGTTCAAGAAATGCAAAATCTGCGGCTCACAGACCTTATGCCGATTCCACTAATTCGACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACCCTGGATCTAAATAGAACCGCTGAAATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGACTGATAGAGAAAACATCAAAGAATCATATAAAGTGGAAGGGATGTGATGGGCTTGGACCTCGAGAACTGGAAGACCAAGTTAATAGTTTAAAGGCTGAAGTTGATAGTCTATATGCCGAGGAATGCAAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGTGAAAGCTCTCAAAAGTACCTCTTTATAACCAAGGAAGATATTCTTGGCCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTCCATCGAGGTTCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACCACAAGTTTGAGGATGATAGTGCCAAACCGATGAAATTAACAAATCCATCATGGAATAGTGATCTCTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAAAATGATGAAAATAATCCTTCTGAGCGTTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACTGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGTGGGGGAAGGAGTAG

Predicted protein sequences of Glyma04g02720

Limit To All Plant Sequences

>Glyma04g02720.3   sequence type=predicted peptide   gene model=Glyma04g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQRYENNVFKSHISNIEAAPGMTQTVHLPPPLQTDPTIRGKQNGKPKGSRNAKSAAHRPYADSTNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIKWKGCDGLGPRELEDQVNSLKAEVDSLYAEECKLDDCIRKKQELLRNLEESESSQKYLFITKEDILGLPCFQNQEIIAIKAPKASSIEVPDPDEELGFRQRQYKMIVRSAIGPIYLYLLSKDDHKFEDDSAKPMKLTNPSWNSDLYRKRGVGLLESQNDENNPSERFSLQGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTELWGKE*

>Glyma04g02720.4   sequence type=predicted peptide   gene model=Glyma04g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQRYENNVFKSHISNIEAAPGMTQTVHLPPPLQTDPTIRGKQNGKPKGSRNAKSAAHRPYADSTNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIKWKGCDGLGPRELEDQVNSLKAEVDSLYAEECKLDDCIRKKQELLRNLEESESSQKYLFITKEDILGLPCFQNQEIIAIKAPKASSIEVPDPDEELGFRQRQYKMIVRSAIGPIYLYLLSKDDHKFEDDSAKPMKLTNPSWNSDLYRKRGVGLLESQNDENNPSERFSLQGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTELWGKE*

>Glyma04g02720.5   sequence type=predicted peptide   gene model=Glyma04g02720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQRYENNVFKSHISNIEAAPGMTQTVHLPPPLQTDPTIRGKQNGKPKGSRNAKSAAHRPYADSTNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIKWKGCDGLGPRELEDQVNSLKAEVDSLYAEECKLDDCIRKKQELLRNLEESESSQKYLFITKEDILGLPCFQNQEIIAIKAPKASSIEVPDPDEELGFRQRQYKMIVRSAIGPIYLYLLSKDDHKFEDDSAKPMKLTNPSWNSDLYRKRGVGLLESQNDENNPSERFSLQGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTELWGKE*

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