Glyma04g02700 - SoyBase

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Report for Sequence Feature Glyma04g02700

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1905065
stop:	1908024
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75720	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) \| chr1:28434648-28435321 REVERSE LENGTH=193	SoyBase	E_val: 3.00E-36	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05701	PFAM	Plant protein of unknown function (DUF827)	JGI		ISS
UniRef100_I1JT36	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT36_SOYBN	SoyBase	E_val: 4.00E-150	ISS
UniRef100_Q7XT19	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSJNBb0050O03.3 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XT19_ORYSJ	SoyBase	E_val: 9.00E-25	ISS

Expression Patterns of Glyma04g02700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02700

Paralog	Evidence	Comments
Glyma06g02714	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g024600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g02700

Limit To All Plant Sequences

>Glyma04g02700.2   sequence type=transcript   gene model=Glyma04g02700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTCACTTACTCTTTTTATTTTTCTCCAAGTATAAACACCCACTGATATTAATCATTTTATTTTTTTAATTTTTGTATCACATTTCCTATAATGTGAACCCTGTAGGTTTCCATAGGCTTCTCTAGTGGAAAGAAAAACGAAAGAACAGTGGGGCTCTTTAAGTTGGCTACGGGTGAAGAGTCCTTGTCTTTAGTTGTGCTAAAAATATATAAATATTTTGGGCCATTTAGGTCCAACACCAACAGTACCAAGACCCAAGAGCATCCATCCACCCACCCTCAAACATAACAGAATTCTAGTGAAGTGGACGCGAAGAAACGAAGCTTCCAATCTTCATATGTTATATCTCAACCCTCTCTCCTTTGTCCAATTCTAGTACTTAATTCCTACTTGTAGACAATCCATCTCAATCTTCTCTCTCACATACACATTCACTAGCAGCCATCCTTGTTCGCTGTTTCCACTCCCATCCCTTTTAATTTTCTTAGCTTTATTGTGGAAGAAACACAAACATGAACATGGAAGGTGGTGTCTTGCTGGTCAGAAAGGCAGAGATAGACACAAGGGCACCATTCCGGTCTGTCAAAGAGGCTGTCTCATTGTTCGGTGAGAAAGTCTTAGCTGGAGAGGTTTATGCAAGTGCAAACAAGCTCAAAAAGAGTGGAGCAAATGAAAACGGCGTTGATTTTTGGAGAATTGAAAACGTTGAAGCTGAGTTAGAGGAGACGAGGGAAAACCTGCAGAGGGCAAAGGAAGAAAGCATGGTAATGGCCCATTGCCTGTCTTCTCTGCAGGAAGAGCTTGAACGCACGAAGCAAGAGCTCCAACAACTGAAGCAACGGGAAACAGAGAAGCACCCGGTGGAATCTGAAATTGAAGATGTCAAGTTTGTGGAGAACTTAACGACGTTTGGAGTGCAAAGTTCGAGATTCGACCAGGAAAATATGGAGTTCCAAAAGAAAAGGTACGTCACGTTCGCGAATCCGCCATCGGTGTCTCATCACGTGATGCTACCGCAACACGGGGTTGAAAAGTTGGAAAGGCACCCTTCTCTCAGGAAGAAGAACAAGAAGTCGTTCATTCCTTTGATTGGAGGCATTTTTTCAAGGAAAAAGGGAAGCCAAGAAATTCCATGAAACCAATTTGAATCAAACGTAAGTTCAGGGCTTTGGTTGGTTTTCCAAACATACGCTAAGTACCATATATGTTTTCGGTTTACTAATATGTTAATTACCAGAATAATTGCCAACTGCATTTTGTTTAGAGTTTCTTTTCTTTCTTTTTTCTCAAAAGGTATATTTTCTTGTCCTCTGTAACGTAACAGACTTTAATGGCAAATGGCCCGTACAATGTAGTTAAACTCAGTAGCAGAGTAGCGGAATATGTATGCATGTGGAGTGTGGTTCATGTAATAAAGCACCATAATTACAATTTCACATTCTCAGTTTTCATTTAGACATATGAGGCCCAAAGAATCAAAGCAATTATTTCCACTTC

Coding sequences of Glyma04g02700

Limit To All Plant Sequences

>Glyma04g02700.1   sequence type=CDS   gene model=Glyma04g02700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGAAGGTGGTGTCTTGCTGGTCAGAAAGGCAGAGATAGACACAAGGGCACCATTCCGGTCTGTCAAAGAGGCTGTCTCATTGTTCGGTGAGAAAGTCTTAGCTGGAGAGGTTTATGCAAGTGCAAACAAGCTCAAAAAGATACAGAGTGGAGCAAATGAAAACGGCGTTGATTTTTGGAGAATTGAAAACGTTGAAGCTGAGTTAGAGGAGACGAGGGAAAACCTGCAGAGGGCAAAGGAAGAAAGCATGGTAATGGCCCATTGCCTGTCTTCTCTGCAGGAAGAGCTTGAACGCACGAAGCAAGAGCTCCAACAACTGAAGCAACGGGAAACAGAGAAGCACCCGGTGGAATCTGAAATTGAAGATGTCAAGTTTGTGGAGAACTTAACGACGTTTGGAGTGCAAAGTTCGAGATTCGACCAGGAAAATATGGAGTTCCAAAAGAAAAGGTACGTCACGTTCGCGAATCCGCCATCGGTGTCTCATCACGTGATGCTACCGCAACACGGGGTTGAAAAGTTGGAAAGGCACCCTTCTCTCAGGAAGAAGAACAAGAAGTCGTTCATTCCTTTGATTGGAGGCATTTTTTCAAGGAAAAAGGGAAGCCAAGAAATTCCATGA

>Glyma04g02700.2   sequence type=CDS   gene model=Glyma04g02700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGAAGGTGGTGTCTTGCTGGTCAGAAAGGCAGAGATAGACACAAGGGCACCATTCCGGTCTGTCAAAGAGGCTGTCTCATTGTTCGGTGAGAAAGTCTTAGCTGGAGAGGTTTATGCAAGTGCAAACAAGCTCAAAAAGAGTGGAGCAAATGAAAACGGCGTTGATTTTTGGAGAATTGAAAACGTTGAAGCTGAGTTAGAGGAGACGAGGGAAAACCTGCAGAGGGCAAAGGAAGAAAGCATGGTAATGGCCCATTGCCTGTCTTCTCTGCAGGAAGAGCTTGAACGCACGAAGCAAGAGCTCCAACAACTGAAGCAACGGGAAACAGAGAAGCACCCGGTGGAATCTGAAATTGAAGATGTCAAGTTTGTGGAGAACTTAACGACGTTTGGAGTGCAAAGTTCGAGATTCGACCAGGAAAATATGGAGTTCCAAAAGAAAAGGTACGTCACGTTCGCGAATCCGCCATCGGTGTCTCATCACGTGATGCTACCGCAACACGGGGTTGAAAAGTTGGAAAGGCACCCTTCTCTCAGGAAGAAGAACAAGAAGTCGTTCATTCCTTTGATTGGAGGCATTTTTTCAAGGAAAAAGGGAAGCCAAGAAATTCCATGA

Predicted protein sequences of Glyma04g02700

Limit To All Plant Sequences

>Glyma04g02700.1   sequence type=predicted peptide   gene model=Glyma04g02700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMEGGVLLVRKAEIDTRAPFRSVKEAVSLFGEKVLAGEVYASANKLKKIQSGANENGVDFWRIENVEAELEETRENLQRAKEESMVMAHCLSSLQEELERTKQELQQLKQRETEKHPVESEIEDVKFVENLTTFGVQSSRFDQENMEFQKKRYVTFANPPSVSHHVMLPQHGVEKLERHPSLRKKNKKSFIPLIGGIFSRKKGSQEIP*

>Glyma04g02700.2   sequence type=predicted peptide   gene model=Glyma04g02700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMEGGVLLVRKAEIDTRAPFRSVKEAVSLFGEKVLAGEVYASANKLKKSGANENGVDFWRIENVEAELEETRENLQRAKEESMVMAHCLSSLQEELERTKQELQQLKQRETEKHPVESEIEDVKFVENLTTFGVQSSRFDQENMEFQKKRYVTFANPPSVSHHVMLPQHGVEKLERHPSLRKKNKKSFIPLIGGIFSRKKGSQEIP*

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