Glyma04g02600 - SoyBase

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Report for Sequence Feature Glyma04g02600

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1848728
stop:	1853961
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30755	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF668) \| chr1:10905991-10908773 REVERSE LENGTH=615	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF05003	PFAM	Protein of unknown function (DUF668)	JGI		ISS
PF11961	PFAM	Domain of unknown function (DUF3475)	JGI		ISS
UniRef100_Q9SA91	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T5I8.21 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SA91_ARATH	SoyBase	E_val: 4.00E-144	ISS
UniRef100_UPI000233A824	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A824 related cluster n=1 Tax=unknown RepID=UPI000233A824	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02600

Paralog	Evidence	Comments
Glyma06g02640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g023800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g02600

Limit To All Plant Sequences

>Glyma04g02600.3   sequence type=transcript   gene model=Glyma04g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTACTGTATTTTTTTCTTCCAAAAACGAAATCCTGTGAACGAAGACTAATAGTGTAATGTATATACAACAAAGTATGTTATTGAATATATCTAAAAATGTTGTAATAAGTACAGAATTAAGGTAGTTGATAGGAATGTTAATTAGGGTGGTTTGGTCCACGTAGTGCTGCGTTTTCATGTTTTAATGTTTGATGCAATACACAGTACTACACGGGGCACACATAGTCGTCGTTGGCATTCATTGTTGGGGTGCCACGTCTAGTCAAACTACTCCATTTCATTCCAACCCCAGCAAGCATTCTATTTCCGCGTTTTCTCTCTTTTCATTAATTGCTTACTTTTACTATTTTATTCGTTCAACCGTATGAAATCAATGAATGAATGTCATCAACAACATCTTATGTTTTTAGTCAAACCCCAGAGTCGTAAATTCTCGGCGACTTTTCCCTTTTTCATACCTCCTTACCATTCCCATGCCCTCCTTTTCTAATCTCATTTTCCTTCTCCATTTCAAACACTCTCTGTAAATAGATAATAATGGGATCGGTTTGTTCGGCTGGTATGGTGGAGAAAAATGGTGAACTTGGAGGGAAGAGTTTGGGGCTTTCTGGGAAGCTTAAGAAGGAAAATAGCTTTGTGAATCGGAGAGAAGCTTTTTCAGATTCAAGGTCTAATAGTGGTCACTCTAGAAAGCAAAAGAAGCACGATACTGGGTTTTCCCATGAACTTGGTTTATCGTCTCCTTCACCTGGGGGGAAACAGGTGAGTCAGAGGGGTTCTATTCTGGGAAAAGCAGGCGAGAGAGCAGTGGAAGTTCTGGACACAATTGGAAGTGGCATGCCTAAGTTAAACACTAATAGCGGGTTTGTCTCTGGCACAACTTCTAGAGGGAATAAGATATCAATACTGGCATTTGAAGTAGCTAATACAATAACCAAAGGAACAATTTTGTTTCAATCACTTTCTGAAGAAAACATTCAGTTCCTTAAAAATGAGGTGTTACAATCGGAGGGGGTTCAGCTATTAGTATCAACTGATGTGAAGAAGTTAATAGCTCTTGCTGAGGCTGACAAAAGGGAAGAACTCAATGTCTTCTCAAGGGAAGTGACTAGATTTGGAAATATGTGTAAAGATCCACAGTGGCACAACCTAGACAGATATTTCTCAAGATTAGATTTGGATGTCCTGGATGACAAACAATATCAGGTAGAGGCAGAAAAGACAATGCAGGAGTTTACCAGCCTAGTTCGGAATACTTCTGAATTATACCATGAGTTAAATGCTTATGAACGTTTTGAACAAGATTATCTGCAAAAGATTAAGGAAATGGAGTCCTTAAACCTTCCTCTAAAAGGGGAGAGTATCACAATGTTTCAAAGTGAGCTAAAGCACCAAAGAAAGCTTGTGAGGAGCTTGAAAAAGAAGTCTCTTTGGTCCAGAACTTTGGAAGAGATAGTTGAAAAGCTCGTTGATATTGTTACCTATATACATCAAGCAATTTATCTGTTCCTTGGAAATCATGGTACAGCTGCAACTAAGCACAGTGACGGTCCTGAAAGACTAGGGGAAGCTGGTCTTGCACTGCACTATGCTAACATCATCAGTCAGATAAATATGATTGCATCTCGCCCAACTGCTCTTCCTCCAAACACCCGAGACACATTGTATCATGGTTTGCCCAACAATATTAAGGCTGCTCTTCCATCCCAGTTGCAAACCGTTGCTGACATGAAAGAGCTCTCCATCACTCAGATCAAAGCTGAAATGGAAAAGATTCTTCAGTGGCTTGCACCACTTGCCACAAATACAGTCAAAGCACATCAAGGTTTCGGATGGGTAGGTGAATGGGCAAACACAAGTAATGACTCTGGCGATAACACCTCCAAAGAAAATAACCTGATTCGCCTGCAGACACTTTATTACGCTGATAAGAGGAAGATAGATGTTTACATCATTGAATTGTTGGCATGGCTTCACCATTTGATTAGCTCTGTAAAATCTAGACAGAATACCTTGAGACCAATGCCTACACGGTCTCCTCCAAAGGGACACGAACTTCAGTCTAAGATGCGACAGTTATTAATTCTATCTGTGGATAGTAGCAACAAGCCGTTGGGAACTCAAATTTCTCATGAGGATAGGAGATTATTGGAGGATGTTATTGCAAGGAAAAAGAACCCTGGACTTAGCAAAAGCGAGGATCTTGGTTTGGCTAAGAAAAGACAAGTCAAACATTTGCAAGTGACCAAAAGTGCTGGGAGTTCACCTGCCAAGGAATTCTTCGGTACAAGACTCGTCTTTAACCACCAAAACTATAACGTTTTGGATATTATGGATGGGTTGGGTTACTGAAAACTTCATCTACACTCAATCGTTGTTCTCACTTCTCACCTCTCACTTGTTTTTCTGCTGGAATTCTTGCTTAGGGATAATATTCAACATTCATTTCTATACAACTCTAGTTATGTACATATCTATATCTATATGAACGACTAACGCTGGATTCATTTAACTTTATAAATTACTTTTGTACAGGGGATGAGGAAAATAGTTGAATTCCTTTTATTGTTCAATTTATTATTTTTTTGGTGAATACATTCTCTATTTTTGTTGTC

Coding sequences of Glyma04g02600

Limit To All Plant Sequences

>Glyma04g02600.2   sequence type=CDS   gene model=Glyma04g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATCGGTTTGTTCGGCTGGTATGGTGGAGAAAAATGGTGAACTTGGAGGGAAGAGTTTGGGGCTTTCTGGGAAGCTTAAGAAGGAAAATAGCTTTGTGAATCGGAGAGAAGCTTTTTCAGATTCAAGGTCTAATAGTGGTCACTCTAGAAAGCAAAAGAAGCACGATACTGGGTTTTCCCATGAACTTGGTTTATCGTCTCCTTCACCTGGGGGGAAACAGGTGAGTCAGAGGGGTTCTATTCTGGGAAAAGCAGGCGAGAGAGCAGTGGAAGTTCTGGACACAATTGGAAGTGGCATGCCTAAGTTAAACACTAATAGCGGGTTTGTCTCTGGCACAACTTCTAGAGGGAATAAGATATCAATACTGGCATTTGAAGTAGCTAATACAATAACCAAAGGAACAATTTTGTTTCAATCACTTTCTGAAGAAAACATTCAGTTCCTTAAAAATGAGGTGTTACAATCGGAGGGGGTTCAGCTATTAGTATCAACTGATGTGAAGAAGTTAATAGCTCTTGCTGAGGCTGACAAAAGGGAAGAACTCAATGTCTTCTCAAGGGAAGTGACTAGATTTGGAAATATGTGTAAAGATCCACAGTGGCACAACCTAGACAGATATTTCTCAAGATTAGATTTGGATGTCCTGGATGACAAACAATATCAGGTAGAGGCAGAAAAGACAATGCAGGAGTTTACCAGCCTAGTTCGGAATACTTCTGAATTATACCATGAGTTAAATGCTTATGAACGTTTTGAACAAGATTATCTGCAAAAGATTAAGGAAATGGAGTCCTTAAACCTTCCTCTAAAAGGGGAGAGTATCACAATGTTTCAAAGTGAGCTAAAGCACCAAAGAAAGCTTGTGAGGAGCTTGAAAAAGAAGTCTCTTTGGTCCAGAACTTTGGAAGAGATAGTTGAAAAGCTCGTTGATATTGTTACCTATATACATCAAGCAATTTATCTGTTCCTTGGAAATCATGGTACAGCTGCAACTAAGCACAGTGACGGTCCTGAAAGACTAGGGGAAGCTGGTCTTGCACTGCACTATGCTAACATCATCAGTCAGATAAATATGATTGCATCTCGCCCAACTGCTCTTCCTCCAAACACCCGAGACACATTGTATCATGGTTTGCCCAACAATATTAAGGCTGCTCTTCCATCCCAGTTGCAAACCGTTGCTGACATGAAAGAGCTCTCCATCACTCAGATCAAAGCTGAAATGGAAAAGATTCTTCAGTGGCTTGCACCACTTGCCACAAATACAGTCAAAGCACATCAAGGTTTCGGATGGGTAGGTGAATGGGCAAACACAAGTAATGACTCTGGCGATAACACCTCCAAAGAAAATAACCTGATTCGCCTGCAGACACTTTATTACGCTGATAAGAGGAAGATAGATGTTTACATCATTGAATTGTTGGCATGGCTTCACCATTTGATTAGCTCTGTAAAATCTAGACAGAATACCTTGAGACCAATGCCTACACGGTCTCCTCCAAAGGGACACGAACTTCAGTCTAAGATGCGACAGTTATTAATTCTATCTGTGGATAGTAGCAACAAGCCGTTGGGAACTCAAATTTCTCATGAGGATAGGAGATTATTGGAGGATGTTATTGCAAGGAAAAAGAACCCTGGACTTAGCAAAAGCGAGGATCTTGGTTTGGCTAAGAAAAGACAAGTCAAACATTTGCAAGTGACCAAAAGTGCTGGGAGTTCACCTGCCAAGGAATTCTTCGGTACAAGACTCGTCTTTAACCACCAAAACTATAACGTTTTGGATATTATGGATGGGTTGGGTTACTGA

>Glyma04g02600.3   sequence type=CDS   gene model=Glyma04g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATCGGTTTGTTCGGCTGGTATGGTGGAGAAAAATGGTGAACTTGGAGGGAAGAGTTTGGGGCTTTCTGGGAAGCTTAAGAAGGAAAATAGCTTTGTGAATCGGAGAGAAGCTTTTTCAGATTCAAGGTCTAATAGTGGTCACTCTAGAAAGCAAAAGAAGCACGATACTGGGTTTTCCCATGAACTTGGTTTATCGTCTCCTTCACCTGGGGGGAAACAGGTGAGTCAGAGGGGTTCTATTCTGGGAAAAGCAGGCGAGAGAGCAGTGGAAGTTCTGGACACAATTGGAAGTGGCATGCCTAAGTTAAACACTAATAGCGGGTTTGTCTCTGGCACAACTTCTAGAGGGAATAAGATATCAATACTGGCATTTGAAGTAGCTAATACAATAACCAAAGGAACAATTTTGTTTCAATCACTTTCTGAAGAAAACATTCAGTTCCTTAAAAATGAGGTGTTACAATCGGAGGGGGTTCAGCTATTAGTATCAACTGATGTGAAGAAGTTAATAGCTCTTGCTGAGGCTGACAAAAGGGAAGAACTCAATGTCTTCTCAAGGGAAGTGACTAGATTTGGAAATATGTGTAAAGATCCACAGTGGCACAACCTAGACAGATATTTCTCAAGATTAGATTTGGATGTCCTGGATGACAAACAATATCAGGTAGAGGCAGAAAAGACAATGCAGGAGTTTACCAGCCTAGTTCGGAATACTTCTGAATTATACCATGAGTTAAATGCTTATGAACGTTTTGAACAAGATTATCTGCAAAAGATTAAGGAAATGGAGTCCTTAAACCTTCCTCTAAAAGGGGAGAGTATCACAATGTTTCAAAGTGAGCTAAAGCACCAAAGAAAGCTTGTGAGGAGCTTGAAAAAGAAGTCTCTTTGGTCCAGAACTTTGGAAGAGATAGTTGAAAAGCTCGTTGATATTGTTACCTATATACATCAAGCAATTTATCTGTTCCTTGGAAATCATGGTACAGCTGCAACTAAGCACAGTGACGGTCCTGAAAGACTAGGGGAAGCTGGTCTTGCACTGCACTATGCTAACATCATCAGTCAGATAAATATGATTGCATCTCGCCCAACTGCTCTTCCTCCAAACACCCGAGACACATTGTATCATGGTTTGCCCAACAATATTAAGGCTGCTCTTCCATCCCAGTTGCAAACCGTTGCTGACATGAAAGAGCTCTCCATCACTCAGATCAAAGCTGAAATGGAAAAGATTCTTCAGTGGCTTGCACCACTTGCCACAAATACAGTCAAAGCACATCAAGGTTTCGGATGGGTAGGTGAATGGGCAAACACAAGTAATGACTCTGGCGATAACACCTCCAAAGAAAATAACCTGATTCGCCTGCAGACACTTTATTACGCTGATAAGAGGAAGATAGATGTTTACATCATTGAATTGTTGGCATGGCTTCACCATTTGATTAGCTCTGTAAAATCTAGACAGAATACCTTGAGACCAATGCCTACACGGTCTCCTCCAAAGGGACACGAACTTCAGTCTAAGATGCGACAGTTATTAATTCTATCTGTGGATAGTAGCAACAAGCCGTTGGGAACTCAAATTTCTCATGAGGATAGGAGATTATTGGAGGATGTTATTGCAAGGAAAAAGAACCCTGGACTTAGCAAAAGCGAGGATCTTGGTTTGGCTAAGAAAAGACAAGTCAAACATTTGCAAGTGACCAAAAGTGCTGGGAGTTCACCTGCCAAGGAATTCTTCGGTACAAGACTCGTCTTTAACCACCAAAACTATAACGTTTTGGATATTATGGATGGGTTGGGTTACTGA

Predicted protein sequences of Glyma04g02600

Limit To All Plant Sequences

>Glyma04g02600.2   sequence type=predicted peptide   gene model=Glyma04g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVCSAGMVEKNGELGGKSLGLSGKLKKENSFVNRREAFSDSRSNSGHSRKQKKHDTGFSHELGLSSPSPGGKQVSQRGSILGKAGERAVEVLDTIGSGMPKLNTNSGFVSGTTSRGNKISILAFEVANTITKGTILFQSLSEENIQFLKNEVLQSEGVQLLVSTDVKKLIALAEADKREELNVFSREVTRFGNMCKDPQWHNLDRYFSRLDLDVLDDKQYQVEAEKTMQEFTSLVRNTSELYHELNAYERFEQDYLQKIKEMESLNLPLKGESITMFQSELKHQRKLVRSLKKKSLWSRTLEEIVEKLVDIVTYIHQAIYLFLGNHGTAATKHSDGPERLGEAGLALHYANIISQINMIASRPTALPPNTRDTLYHGLPNNIKAALPSQLQTVADMKELSITQIKAEMEKILQWLAPLATNTVKAHQGFGWVGEWANTSNDSGDNTSKENNLIRLQTLYYADKRKIDVYIIELLAWLHHLISSVKSRQNTLRPMPTRSPPKGHELQSKMRQLLILSVDSSNKPLGTQISHEDRRLLEDVIARKKNPGLSKSEDLGLAKKRQVKHLQVTKSAGSSPAKEFFGTRLVFNHQNYNVLDIMDGLGY*

>Glyma04g02600.3   sequence type=predicted peptide   gene model=Glyma04g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVCSAGMVEKNGELGGKSLGLSGKLKKENSFVNRREAFSDSRSNSGHSRKQKKHDTGFSHELGLSSPSPGGKQVSQRGSILGKAGERAVEVLDTIGSGMPKLNTNSGFVSGTTSRGNKISILAFEVANTITKGTILFQSLSEENIQFLKNEVLQSEGVQLLVSTDVKKLIALAEADKREELNVFSREVTRFGNMCKDPQWHNLDRYFSRLDLDVLDDKQYQVEAEKTMQEFTSLVRNTSELYHELNAYERFEQDYLQKIKEMESLNLPLKGESITMFQSELKHQRKLVRSLKKKSLWSRTLEEIVEKLVDIVTYIHQAIYLFLGNHGTAATKHSDGPERLGEAGLALHYANIISQINMIASRPTALPPNTRDTLYHGLPNNIKAALPSQLQTVADMKELSITQIKAEMEKILQWLAPLATNTVKAHQGFGWVGEWANTSNDSGDNTSKENNLIRLQTLYYADKRKIDVYIIELLAWLHHLISSVKSRQNTLRPMPTRSPPKGHELQSKMRQLLILSVDSSNKPLGTQISHEDRRLLEDVIARKKNPGLSKSEDLGLAKKRQVKHLQVTKSAGSSPAKEFFGTRLVFNHQNYNVLDIMDGLGY*

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