Report for Sequence Feature Glyma04g02580
Feature Type: gene_model
Chromosome: Gm04
Start: 1835972
stop: 1839583
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g02580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G75800 AT
Annotation by Michelle Graham. TAIR10: Pathogenesis-related thaumatin superfamily protein | chr1:28458889-28460447 FORWARD LENGTH=330
SoyBase E_val: 8.00E-137 ISS
GO:0051707 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to other organism
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF00314 PFAM
Thaumatin family
JGI ISS
UniRef100_G7I7Q3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Thaumatin-like protein n=1 Tax=Medicago truncatula RepID=G7I7Q3_MEDTR
SoyBase E_val: 2.00E-172 ISS
UniRef100_I1JT26 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JT26_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g02580
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g02580
Paralog Evidence Comments
Glyma06g02630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g02580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g023700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g02580
Coding sequences of Glyma04g02580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g02580.1 sequence type=CDS gene model=Glyma04g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATCAGTTAACACTAGCATTTCCATTTTTACTAACACTTCATCTGTTAGTATCAGGTGTAGTAGCAACAACATCGTTCACACTGGTTAACAAATGCGACTACACAGTGTGGCCAGGCATTCTCTCAAACGCAGGAATCGCCACGCTTCCAACAACAGGTTTCGTTCTTCAAACCGGAGAGTCCAAAACCGTAACCGCTCCAACCTCTTGGGGTGGCCGTTTCTGGGGCCGCACACTCTGCACGCAAGACTCCGCCGGAAAATTCTCTTGCCTCAGCGGCGATTGCGGCTCCGGCAAGCTCGAATGCGCCGGAAACGCCGCCACGCCGCCTGCTACCTTAGCCGAGTTCACTCTCGACGGCGCCGGAGGCCTCGATTTCTTCGACGTGAGCCTCGTGGACGGTTACAACGTGCCGATGCTGGTGGCTCCCCAGGGTGGCTCCGGCGATAACTGCACGAGCACTGGGTGCGTTGGGGACCTGAACGGCGCGTGTCCTTCGGAGCTTAGGGTTACGAGCGTGGATGGGAAACAGAGCGTGGCGTGTAAGAGCGCGTGCGAGGCGTTCGGGTCCCCGCAGTATTGCTGCAGCGGCGCGTATGGGTCGCCCACCACTTGCAAGCCTTCGCCTTACTCGCAGATTTTCAAGAACGCTTGCCCACGCGCCTACAGCTACGCGTACGATGACAAGACCAGCACGTTTACGTGCGCTTCTGCTGCGGCTTACACCATCACTTTTTGTCCTTCTCCTAGCAGTAACCCCAGTCAGAAATCGTGGCAAGGGCAAAACCCTAAATCAGATAGTAGTGGCTCGGCTTCGGCTTCTGCTTCTGGGTCGCCGCAACTTAACAACGGCACAATGGTATATGTAGGTAGCATGGATGAAAGTGAATTATGGTCCGCAGGTAGTACCCATGGGCCGGAATCTCAAACCATTGCGGGCTTTGTTAGTATCACCATCGCTGTTTGGCTCTTGTGCCACCTCTACTAA
Predicted protein sequences of Glyma04g02580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g02580.1 sequence type=predicted peptide gene model=Glyma04g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDQLTLAFPFLLTLHLLVSGVVATTSFTLVNKCDYTVWPGILSNAGIATLPTTGFVLQTGESKTVTAPTSWGGRFWGRTLCTQDSAGKFSCLSGDCGSGKLECAGNAATPPATLAEFTLDGAGGLDFFDVSLVDGYNVPMLVAPQGGSGDNCTSTGCVGDLNGACPSELRVTSVDGKQSVACKSACEAFGSPQYCCSGAYGSPTTCKPSPYSQIFKNACPRAYSYAYDDKTSTFTCASAAAYTITFCPSPSSNPSQKSWQGQNPKSDSSGSASASASGSPQLNNGTMVYVGSMDESELWSAGSTHGPESQTIAGFVSITIAVWLLCHLY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
