Glyma04g02570 - SoyBase

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Report for Sequence Feature Glyma04g02570

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1816365
stop:	1822994
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24200	AT	Annotation by Michelle Graham. TAIR10: Transcription elongation factor (TFIIS) family protein \| chr4:12556927-12559929 REVERSE LENGTH=1000	SoyBase	E_val: 2.00E-131	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
UniRef100_B9RB66	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RB66_RICCO	SoyBase	E_val: 6.00E-11	ISS
UniRef100_I1K7I9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7I9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02570

Paralog	Evidence	Comments
Glyma06g02610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g023600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02570

Limit To All Plant Sequences

>Glyma04g02570.2   sequence type=CDS   gene model=Glyma04g02570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTTGAAGATTTCTTTACCTTGTCTGAGATGAAAGATGGGCTCACAGCACCTTCTCGGGTGCAGGAGCTGGTCTCTGTGATGCAAAAGGAGAAAGATAGTGAGGTTAAAAATGCTGCTGATGTGACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGCCTTGATCTTTTTATTCAATTAGATGGACTTTGCTTCATTAATAGATGGTTAAAGGATGCCCAAGATTTTGGGGTTGATGCAAACGACAGCTTCGTTGAAGAATCAATCACTGCAATGTTACGTGCAGTTGAAAAGCTGCATATAGACAGTGAGAAGTCAATGTCTTCAGGAATTCGCATCACTGTAAGTAATCTTCTTGGCCATCATAGTGCTAGGGTTCAGGATAGAGCAAGAACGTTGTTTGACAGCTGGAAGGGAGTTGGAAATGGTGATACTGAATCTCATGATGTGGAACTTGCTAAGGTTGACAATTCAAGTGACAAGATTGTCAGGGAGGAAACACAGCCATCTGCTGCAAATGAAGCTGGCAATGATAATGATCCTGCATCAGGACTAATTGGAAGTGAGAAATCTCTGTTGAAAAGCTCGGATAATTTACCGGTACATAGTTCTGATAATGTGCTCCAGTTATCTGCCAGTGTGGAATGTATTGACATCAAAGTGGGATCGGAAAACCATGTTGCTGGTGTTCCATCTTCTGCTCAAGAAGTTGCTCCCGCTCATGAAGGATTGCCTATATGCACTACAGGTGAGACCACTTCGGCTGGAACCTGTAACTTTCCCATTCCAAATCAAAGCAGTTTTGAAGGACAGTCAGATGTGGTACAGTTAAGTGACTTAGCTAAAGTGGAAAAGCAGGAGCAAAACATTAATGACCCTCCAGAAAAATTAGGAGCACCAGAGATCTGTTCTGTGTCCTCTAATAAGCCAGAGTCTGAGCCTGTTTCCATGGTTGCTTGCGAAGCAAAAGCACCAGAGTCTGTGAAAAACCCAGCTTTAGAGCAAAATGTTGAACACAATGAGGATGATGTTTGTCGTAATTTAACTAATTCTGCTAGTATGAGGACACCTGCATCTGATAGGAGTGGGGAAGATGATGTAACTAGCATTACACAAGTTTTTAAAGCTACAGAAAATGATAATGATTGTTGTTCTAATGCATTGCAGGGCGCATCAGTCAGTGACAGTAACTTGGGAAAGACTGAGGTGTTAGACGTGTCTGTCTTTGGAACAGAATATGTCACAGCATCAAAGGAAGGCAAGGGCCATGAAGAAGATACATCAATTGGTTCTGATTCTAGTAAACCCGGAATAGATTTCAGAAGCTCTAACATAATTGACAAGAGAGGTTCTGACAATGAACTTGACTGTGGCATTGTGGATGCTTTAGAATTTGCTCGAAAAATTGCTCAGGAAGTTAATAGAGAAGTCAGCTGTTCTTCAGAAAAAGTCTCAGAACACAGAATCAGGCAACCATGCAGTCCAGATTCTGTAAGAAAAGAGGACGAGCTCACTCCTGTCCCACCCAAGGAGGTTTCCTCCAGACAAAGCCATGCTACTGAGGCATGTTCAATGGAGGGGCATGTGAGTATTTTAGACAACAATGAGGCTGAGCCGGAATGCAGACCCTATGTGGTGTCCTTAGAGGTGACTGAAAAAGCTCAAGATTCAGGAGGTAATTCAGAGAAACGACTCTGCGGCTTTGATCTCAATGAAGTTGGTGCTGATGATATGGATGTTTCTGTAAATACTATGTCTACCCCAATACCAGTTGTCTCTGCTTCAAGGCCTGCACCAACTCCTGGGTTGACTGGGGCCCCTTTGCAGTTTGAGGGAACACTTGGATGGAAAGGGTCAGCTGCCACCAGTGCCTTTCGACCTGCGTCGCCTCGTAAAAATTGTGATAATGATAGGAATCTTTCTGTTGATATGAACTTTGATACTTCCAAGCAGAGGCAGGATTGGCTTGATTTTGATCTAAATGTGGCTGAGGGTGAAGAAGGCAATGTAAAACCTACTGCTGAATCTTCAGGCAGGCCTTCTGGGCAATCGTCATTTGAATTTAGTCCTAAAAAATCAAGCAGGCTTGAATTTGATTTGAACAGTACCGGTGATGATGGTGACACCCAACCTTCAGATCAAAGAATGGAGGGACAACTCTTTCTTGGAAGAAATGGCTGTTGGAGCCCATCCCCTGCATCGTCGTCCTCATCAATGCAGCCATCTGTTAGAAACATTGATTTGAATGACAGGCCGTGCCTTCAAACCGATTTGGTAGACCAGGGCCCCATTAAGTCTGCCCATCTTATCAATGCATTTGGTTCTAAATCATCAAATGCTCCTGTTATCTCTCTTCTGGGTGCCAAGGTAGAAGTTGGTAAAAAAGAATGTGTTCCTCAAAGGTTGTCTTTGCAGAATGGCAAGGCTACTGAACCTGCAATAGAACTAACAATGTCAAGAGCAGGTAGCGTTTTAGGGATGACCCCAACAGTACCCTTCAATCATTCATCTGTTTTTGGCTATAATGGAGTGGCGTCAGCATCAGTGACACCCGCAATGTCTTTTTCATCAGCCATGTACGGATCAGGTGGCACAATTCCATACATGGTGGACTCAAGAGGAGCTCCAGTTGTCCCTCAAGTGGGTGGATCTTCATCAACTGTCCTTTCATCTTACTCTCAGCCACCAATCTTTATGAACATGGCTGGTACACAACTTGGTCTGAATGGATTTGGACCTTCACGTCCTAACTTTGACCTGAACTCTAGCTTCATGATTGAGGGTGGGAATAGAGACACATTGGCTGCAAGGCAATTTTTCTTTCCTGTTCAGGGAAGGGCTGTGGAGGAGCAAGTAAGATCCATGCCGCAACCCTCCAGTTCGGGGGTTAGTGGGAAACGAAAAGAACCAGACAGTGGTTTGGAACCCTACCCATTTATCTACAAAAATCCGCAACCTCCATGGAAGTAG

Predicted protein sequences of Glyma04g02570

Limit To All Plant Sequences

>Glyma04g02570.2   sequence type=predicted peptide   gene model=Glyma04g02570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLEDFFTLSEMKDGLTAPSRVQELVSVMQKEKDSEVKNAADVTRQWAAVASTIAATENKDCLDLFIQLDGLCFINRWLKDAQDFGVDANDSFVEESITAMLRAVEKLHIDSEKSMSSGIRITVSNLLGHHSARVQDRARTLFDSWKGVGNGDTESHDVELAKVDNSSDKIVREETQPSAANEAGNDNDPASGLIGSEKSLLKSSDNLPVHSSDNVLQLSASVECIDIKVGSENHVAGVPSSAQEVAPAHEGLPICTTGETTSAGTCNFPIPNQSSFEGQSDVVQLSDLAKVEKQEQNINDPPEKLGAPEICSVSSNKPESEPVSMVACEAKAPESVKNPALEQNVEHNEDDVCRNLTNSASMRTPASDRSGEDDVTSITQVFKATENDNDCCSNALQGASVSDSNLGKTEVLDVSVFGTEYVTASKEGKGHEEDTSIGSDSSKPGIDFRSSNIIDKRGSDNELDCGIVDALEFARKIAQEVNREVSCSSEKVSEHRIRQPCSPDSVRKEDELTPVPPKEVSSRQSHATEACSMEGHVSILDNNEAEPECRPYVVSLEVTEKAQDSGGNSEKRLCGFDLNEVGADDMDVSVNTMSTPIPVVSASRPAPTPGLTGAPLQFEGTLGWKGSAATSAFRPASPRKNCDNDRNLSVDMNFDTSKQRQDWLDFDLNVAEGEEGNVKPTAESSGRPSGQSSFEFSPKKSSRLEFDLNSTGDDGDTQPSDQRMEGQLFLGRNGCWSPSPASSSSSMQPSVRNIDLNDRPCLQTDLVDQGPIKSAHLINAFGSKSSNAPVISLLGAKVEVGKKECVPQRLSLQNGKATEPAIELTMSRAGSVLGMTPTVPFNHSSVFGYNGVASASVTPAMSFSSAMYGSGGTIPYMVDSRGAPVVPQVGGSSSTVLSSYSQPPIFMNMAGTQLGLNGFGPSRPNFDLNSSFMIEGGNRDTLAARQFFFPVQGRAVEEQVRSMPQPSSSGVSGKRKEPDSGLEPYPFIYKNPQPPWK*

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