Glyma04g02560 - SoyBase

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Report for Sequence Feature Glyma04g02560

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1806491
stop:	1808057
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1JT24	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT24_SOYBN	SoyBase	E_val: 1.00E-154	ISS

Expression Patterns of Glyma04g02560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02560

Paralog	Evidence	Comments
Glyma06g02591	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g023500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g02560

Limit To All Plant Sequences

>Glyma04g02560.2   sequence type=transcript   gene model=Glyma04g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCAACGGTTGTCAGTAATTTAGGAGAAATCCTGACATAATCATTAAAATAATTGCAGATATCGCATTACTTCAAAAAAAAAAAAAAAAAGCCGTGGAGCATTCCATCTTGCGATCCTTGCCATATATATTAAAGGCGTACGAATGTGGATAGTCTTAGAAAACCCTTAGAGGCTTAGACCCATCTCCTCTAAAATCAGGGTCCCCTCAATCAAAAAACTTCTTCTTGTTCTGTTGTGTCCATATGTTATATTTTATTTTATGATATACATAGAAGCTTGTTCTTCTGATCTAATTTTATGAGATCAAGTGCTACTTGATCCGTTTGTTTTGAAGAAGATCATCGCCTGTTTTTGGTTAACTGTTTAATCCAAATCCAGTTTCATTTTACGTGATCCGTTAAATCTGAATGGAAGCTGTTTTGACGCCTCACGCGACGGCACAAAAACAACCGTTTGCTCCTAACAAGAACATCAGAATGAAAACCCCGAAGAAAAACGGACGAGGTAATTTCATTTGTGCTAATAACCGGTCTGAGAATTTTGACACGTATGCAGGTCTCTTGAATCCTCCTTCACGCGCCATGTCCTTCTCCTACTCTCACCCGCTCTCAGCTTCTTCACTCTTCACTCATCACTGTGCTCAACAACCACCTCTGCTTCCTCTGCCCCACGTTGTTTCGCCAACTTATGGTAGCGGACAAGGCCTTGTTGTTGTTGTTAATAAAAACAAAAACAGGAGCAGAGACATGTCTCTGACACCTAAGAAATCGAAACCAACGAAGCGAGAGGAAGCGAAGAAGAGATCGGTGACACAATCTGATAACCGCTGGGGACCTGATCCCAAAGACCTTCCCAAAGTGGTGCTAGGGATGGGAAACAACCACCACGACGTCGTTTCGGGGGCGGTTTTCAATCTGGCTCCGCCACCCAGTAGTTTGCCGCTGCCAAAGTTCTCTTTGAGATCCAAACTCGGTTGCAACGCCGAAACCGCCGCTGGTGGCGTTGATGACGGAGCAACCAACAATCTCCGGCGACTTCTGCGCCTCCGGTGATGCTGTTAAACCTACTTCTCTTTCTCTCCTCGTTGCGTGATCGATGGTGCATGAATATGATGCTAAGTTTGTTGGGTCACGTTACTACTGGTAATTATTATTATGTGTAAATAAAAAGGATCGGCGAGGGTAATTTGCTGATTCGGGGTGCCTGCTGAATATGCTTTCGTTTTTTTTCTTTTTCCAAAATAAAAAAAGGTGTGTTTTCTTTTGTTTGTTCAACACTTTTAACTTTTGTGCACCACCTATGCTTTTTTTTTTTGAATTGGGGTGCACAGAAACGATGTGTAGTTCTTTCTATGTACCATCAGTTTCGGCTATCAGTTCCGTGATCCCTCTGTATTTAAATTTTCTTGATATTACTACAAATCTATTTGCTCTTTTTATCACATTTTTACTTTATTATTTTCTTATATTTTTTTCTCTTCTG

Coding sequences of Glyma04g02560

Limit To All Plant Sequences

>Glyma04g02560.1   sequence type=CDS   gene model=Glyma04g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTGTTTTGACGCCTCACGCGACGGCACAAAAACAACCGTTTGCTCCTAACAAGAACATCAGAATGAAAACCCCGAAGAAAAACGGACGAGGTAATTTCATTTGTGCTAATAACCGGTCTGAGAATTTTGACACGTATGCAGGTCTCTTGAATCCTCCTTCACGCGCCATGTCCTTCTCCTACTCTCACCCGCTCTCAGCTTCTTCACTCTTCACTCATCACTGTGCTCAACAACCACCTCTGCTTCCTCTGCCCCACGTTGTTTCGCCAACTTATGGTAGCGGACAAGGCCTTGTTGTTGTTGTTAATAAAAACAAAAACAGGAGCAGAGACATGTCTCTGACACCTAAGAAATCGAAACCAACGAAGCGAGAGGAAGCGAAGAAGAGATCGGTGACACAATCTGATAACCGCTGGGGACCTGATCCCAAAGACCTTCCCAAAGTGGTGCTAGGGATGGGAAACAACCACCACGACGTCGTTTCGGGGGCGGTTTTCAATCTGGCTCCGCCACCCAGTAGTTTGCCGCTGCCAAAGTTCTCTTTGAGATCCAAACTCGGTTGCAACGCCGAAACCGCCGCTGGTGGCGTTGATGACGGAGCAACCAACAATCTCCGGCGACTTCTGCGCCTCCGGTGA

>Glyma04g02560.2   sequence type=CDS   gene model=Glyma04g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTGTTTTGACGCCTCACGCGACGGCACAAAAACAACCGTTTGCTCCTAACAAGAACATCAGAATGAAAACCCCGAAGAAAAACGGACGAGGTAATTTCATTTGTGCTAATAACCGGTCTGAGAATTTTGACACGTATGCAGGTCTCTTGAATCCTCCTTCACGCGCCATGTCCTTCTCCTACTCTCACCCGCTCTCAGCTTCTTCACTCTTCACTCATCACTGTGCTCAACAACCACCTCTGCTTCCTCTGCCCCACGTTGTTTCGCCAACTTATGGTAGCGGACAAGGCCTTGTTGTTGTTGTTAATAAAAACAAAAACAGGAGCAGAGACATGTCTCTGACACCTAAGAAATCGAAACCAACGAAGCGAGAGGAAGCGAAGAAGAGATCGGTGACACAATCTGATAACCGCTGGGGACCTGATCCCAAAGACCTTCCCAAAGTGGTGCTAGGGATGGGAAACAACCACCACGACGTCGTTTCGGGGGCGGTTTTCAATCTGGCTCCGCCACCCAGTAGTTTGCCGCTGCCAAAGTTCTCTTTGAGATCCAAACTCGGTTGCAACGCCGAAACCGCCGCTGGTGGCGTTGATGACGGAGCAACCAACAATCTCCGGCGACTTCTGCGCCTCCGGTGA

Predicted protein sequences of Glyma04g02560

Limit To All Plant Sequences

>Glyma04g02560.1   sequence type=predicted peptide   gene model=Glyma04g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAVLTPHATAQKQPFAPNKNIRMKTPKKNGRGNFICANNRSENFDTYAGLLNPPSRAMSFSYSHPLSASSLFTHHCAQQPPLLPLPHVVSPTYGSGQGLVVVVNKNKNRSRDMSLTPKKSKPTKREEAKKRSVTQSDNRWGPDPKDLPKVVLGMGNNHHDVVSGAVFNLAPPPSSLPLPKFSLRSKLGCNAETAAGGVDDGATNNLRRLLRLR*

>Glyma04g02560.2   sequence type=predicted peptide   gene model=Glyma04g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAVLTPHATAQKQPFAPNKNIRMKTPKKNGRGNFICANNRSENFDTYAGLLNPPSRAMSFSYSHPLSASSLFTHHCAQQPPLLPLPHVVSPTYGSGQGLVVVVNKNKNRSRDMSLTPKKSKPTKREEAKKRSVTQSDNRWGPDPKDLPKVVLGMGNNHHDVVSGAVFNLAPPPSSLPLPKFSLRSKLGCNAETAAGGVDDGATNNLRRLLRLR*

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