Glyma04g02490 - SoyBase

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Report for Sequence Feature Glyma04g02490

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1747205
stop:	1751144
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75900	AT	Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein \| chr1:28499179-28500943 FORWARD LENGTH=364	SoyBase	E_val: 1.00E-154	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0019953	GO-bp	Annotation by Michelle Graham. GO Biological Process: sexual reproduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipase activity	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF39	Panther	LATERAL SIGNALING TARGET PROTEIN 2	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_G7I7T3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7I7T3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JT14	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT14_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02490

Paralog	Evidence	Comments
Glyma06g02530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g022900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02490

Limit To All Plant Sequences

>Glyma04g02490.1   sequence type=CDS   gene model=Glyma04g02490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGTTTATGAAGTTCTTTAATTCTTCTTCGACAAGCTTAATGCTCCGTTTCATATTATCGTTAGTTCTATCATTCAGAGCGAAGGCTGTGGTGAAACTACCGCCAAATATTACCATTCCTGCAGTGATAGCTTTCGGAGATTCCATCGTTGACCCGGGCAACAACAACAAGGTTAAAACACTGGTCAAGTGCGATTTCCCTCCTTACGGTAAAGATTTTGAGGGAGGGATCCCAACCGGTCGATTTTGCAACGGGAAAATTCCATCAGATTTGCTAGTTGAAGAACTGGGTATTAAGGAGCTTTTACCTGCTTATTTGGATCCAAATCTTAAACCAAGTGACCTAGTTACCGGAGTCTGCTTTGCTTCTGGTGCTTCCGGATACGATCCTTTAACGCCAAAAATAGCGTCGGTGATATCAATGTCCGAACAACTAGACATGTTCAAAGAATACATAGGAAAGCTTAAACATATTGTTGGAGAGGACAGAACAAAATTCATCCTAGCCAACAGTTTTTTCCTTGTGGTAGCTGGAAGTGACGACATTGCCAACACCTATTTTATCGCTCGCGTTCGACAATTACAATATGATATTCCAGCTTACACTGATCTTATGCTCCACTCCGCTTCTAATTTCGTAAAGGAATTATATGGACTTGGAGCACGCAGAATCGGAGTACTGAGTGCACCACCGATTGGATGCGTTCCATCACAGAGGACTCTAGCTGGAGGTTTCCAAAGAGAGTGTGCAGAAGAATACAATTACGCCGCCAAGTTATTTAACTCAAAATTATCAAGGGAACTGGACGCTCTTAAGCATAACTTGCCCAATAGTAGGATCGTTTACATTGACGTTTACAACCCCCTAATGGATATCATTGTGAACTACCAACGTCATGGCTATAAAGTTGTGGATAGAGGTTGCTGTGGCACAGGGAAATTGGAGGTGGCAGTGTTATGCAACCCTTTGGGTGCCACTTGTCCCGATGCTTCACAATATGTTTTTTGGGATAGTTATCATCCTACCGAAGGAGTATACAGACAGCTCATAGTCCAAGTCCTTCAAAAATATTTGACTCGATTCTACTGA

Predicted protein sequences of Glyma04g02490

Limit To All Plant Sequences

>Glyma04g02490.1   sequence type=predicted peptide   gene model=Glyma04g02490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALFMKFFNSSSTSLMLRFILSLVLSFRAKAVVKLPPNITIPAVIAFGDSIVDPGNNNKVKTLVKCDFPPYGKDFEGGIPTGRFCNGKIPSDLLVEELGIKELLPAYLDPNLKPSDLVTGVCFASGASGYDPLTPKIASVISMSEQLDMFKEYIGKLKHIVGEDRTKFILANSFFLVVAGSDDIANTYFIARVRQLQYDIPAYTDLMLHSASNFVKELYGLGARRIGVLSAPPIGCVPSQRTLAGGFQRECAEEYNYAAKLFNSKLSRELDALKHNLPNSRIVYIDVYNPLMDIIVNYQRHGYKVVDRGCCGTGKLEVAVLCNPLGATCPDASQYVFWDSYHPTEGVYRQLIVQVLQKYLTRFY*

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