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Report for Sequence Feature Glyma04g02480

Feature Type:gene_model
Chromosome:Gm04
Start:1741621
stop:1743944
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g02480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42170AT Annotation by Michelle Graham. TAIR10: SGNH hydrolase-type esterase superfamily protein | chr5:16848786-16851707 FORWARD LENGTH=369 SoyBaseE_val: 9.00E-137ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PTHR22835Panther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN JGI ISS
PTHR22835:SF39Panther LATERAL SIGNALING TARGET PROTEIN 2 JGI ISS
PF00657PFAM GDSL-like Lipase/Acylhydrolase JGI ISS
UniRef100_G7I7T3UniRef Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7I7T3_MEDTR SoyBaseE_val: 7.00E-146ISS
UniRef100_I1JT13UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT13_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g02480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02480
ParalogEvidenceComments
Glyma06g02520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g022800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g02480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g02480
>Glyma04g02480.1   sequence type=CDS   gene model=Glyma04g02480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTGTGGAACGTGGTGTTTGTGTGTTGTGTTTTATGTTACAGTTTTTGTCACACTGCGGAGGCTATCGTTAAGCTACGAGGCAATGAAACAATACCAGCATTGATTTTGTTCGGGGATTCGATAGTTGACACAGGAAGTAACAATAACCTAATAACGGGGCTTAAGTGCAATTTTCCTCCTTATGGGAGGGATTTCGAGGGTGGGATACCAACAGGAAGATTCAGCAATGGCAAGGTCCCAGCTGACTTCGTAGCGGAAGAATTGGGAATCAAGGAATATATAGCACCATACACGAGTCCTGCTTTGCAGCCTGGTGATCTCCTCAGGGGAGTCAACTTCGCTTCTGGTGGCACGGGATATGATCCTTTGACCGCACAACTAGTGTCAGTCATACCGTTATCTGAGCAACTAGAGCAATTCAAAGAATACATAGGAAAGCTTAAAGGAAATTTTGGAGAAGCAAAAACCAACTTCATCTTGTCCAAAAGTTTAGTACTTGTGGTATCAAGCAGCAACGACATTGCCAATACTTATTTTGCAACTGGAGTAAGGAAACTGAATTATGATGTTCCCAATTACACTGATATGTTGGTGCAACAAGCCTCTTCTTTCGTTAAGGAATTATATGGATTGGGGGCAAGGAGAATAGGAGTGTTTGGTGCACCTCCACTAGGATGTTTGCCATTCGTGCGAGCATTGTTTGGAGGTCTACGAAGACTGTGCTCCGAAGAAATAAACATGGCATCAAAATTGTTTAACTCTAAACTATCTTCAGAGCTGCACAAGCTAAACCAAAGTTTGCCTCAAGCCAAGGTGGTGTATATCCATATTTACGACTCTTTGCTCAATATCATCCAAAACCCAACCAAATATGGATTTGAAGTTGCTGACAAAGGATGCTGCGGCACAGGGACTGTAGAGGCGGCTTTTCTGTGTAATATGTTAGATCCAACAACCTGCTCAGATGATTCTAAATATGTGTTTTGGGACAGCTACCATCCCACACAGAAGACATACCAGATTCTTGTTGGTGAAATCCTCAACAAATATACAAGCAACTTCTCTTGA
Predicted protein sequences of Glyma04g02480
>Glyma04g02480.1   sequence type=predicted peptide   gene model=Glyma04g02480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELWNVVFVCCVLCYSFCHTAEAIVKLRGNETIPALILFGDSIVDTGSNNNLITGLKCNFPPYGRDFEGGIPTGRFSNGKVPADFVAEELGIKEYIAPYTSPALQPGDLLRGVNFASGGTGYDPLTAQLVSVIPLSEQLEQFKEYIGKLKGNFGEAKTNFILSKSLVLVVSSSNDIANTYFATGVRKLNYDVPNYTDMLVQQASSFVKELYGLGARRIGVFGAPPLGCLPFVRALFGGLRRLCSEEINMASKLFNSKLSSELHKLNQSLPQAKVVYIHIYDSLLNIIQNPTKYGFEVADKGCCGTGTVEAAFLCNMLDPTTCSDDSKYVFWDSYHPTQKTYQILVGEILNKYTSNFS*






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