Glyma04g02470 - SoyBase

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Report for Sequence Feature Glyma04g02470

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1737439
stop:	1740161
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11320	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:3807241	SoyBase	E_val: 6.00E-112	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_E6NTZ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: JHL20J20.7 protein n=1 Tax=Jatropha curcas RepID=E6NTZ0_9ROSI	SoyBase	E_val: 3.00E-140	ISS
UniRef100_I1JT12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT12_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g02470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g022700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02470

Limit To All Plant Sequences

>Glyma04g02470.1   sequence type=CDS   gene model=Glyma04g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCCAGTGTTGGACAAACTCAACGCGTTTGCGAAATCCGGCCAGGATTTTTTCGACGGACTTTTCCGTCGCCGCAATCCGGTTGAAATCCTTAAACGGTTGCAGAGAGAAGCGTTCTCTGATCTCATGAAACTGAGAGAGCGTCAAGATAAGGTTGAGCGGGTGCTTTCTTTCTACCAGTCCTCGAAAGTGGGTCCCTTTCAAGAGACCACCACTCACGTGAGAGGACAAGTGGATTTCTTAGGTGCTTTGTTGGTGCTGGGTAACTTAGATGCTGTAGATAAGTTGGGAATCAGAACAGGGGTTGATTCGAGGTTCATTTTTGAAACAACCATGGGGGACAAGGCTACCGGTGCTGCTGAGTTTGTGGCCAGTCATGGAGGGAGGAGGGAACATTGTGAAGAAAAGCCTCTTTCTCTTGCCAAGCTTAGTTTTACAGCAAATGTCAATGATTGGTTCTCTTTCGTGGCTATGCCAATAGGTGCCCGGTGCAGAGATGTTGCTATTGCTTCTAATTCCTTTCATCAGGTTGGAAAAGGGCTTACAGATTTTTCCTATTTTGGGCCACCTCTTCTCAACCTGCACAATGGTACTGCTTTTGGCATAACTGTGAGAAAGTCAAATGTTACTGCTTCATTGGCTCAAATTGTAACTGGTCTGGGTATGCCACCTAGTTCTAGTATAACAGATAATAGATCTAGCACTTTTGGGCAGCTTGTGTATCAATTTTCTAGAGGATCAAAACTGTCTATTCTGGGTCTTCACCATATGCCTTTATCATCAAAGAAACTTGGAAGATTTGGAGCTCTTACAATTCCACTACTCGTGTCCAAGCAAGATGAAGATGAAGTTTCTGAGGCAGTACCTGAAGTATTGCCATTAATAGGAACAAAGACACGTGTGCCAGCTGGTTCTATTGCTTTAATGGCAGAGTCTGAACTTGATGATTTTACAAAGATTGGAGGTTGGGTCGAGATGGACAAATTAAATCCCAAATATTTACAATTGGGTGTAACCATATCTGATGTGTCTGAAGATTCATTTGGTTGGGGAACGAGTCTCAGTGGGAGGATGATTGGAAATTCGGCAAATGAGGCTCATTTTCAGGCTGAATCGTATCTAAAATTTAACATGGGTAATAATTTTTGTTTGAAGCCAGGTCTTGTATTGGGAATAGATGGGAAATCGAAAACAGCTGCCTTAGTGCTTCGATCTAACTGGTCACTGTGA

Predicted protein sequences of Glyma04g02470

Limit To All Plant Sequences

>Glyma04g02470.1   sequence type=predicted peptide   gene model=Glyma04g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPVLDKLNAFAKSGQDFFDGLFRRRNPVEILKRLQREAFSDLMKLRERQDKVERVLSFYQSSKVGPFQETTTHVRGQVDFLGALLVLGNLDAVDKLGIRTGVDSRFIFETTMGDKATGAAEFVASHGGRREHCEEKPLSLAKLSFTANVNDWFSFVAMPIGARCRDVAIASNSFHQVGKGLTDFSYFGPPLLNLHNGTAFGITVRKSNVTASLAQIVTGLGMPPSSSITDNRSSTFGQLVYQFSRGSKLSILGLHHMPLSSKKLGRFGALTIPLLVSKQDEDEVSEAVPEVLPLIGTKTRVPAGSIALMAESELDDFTKIGGWVEMDKLNPKYLQLGVTISDVSEDSFGWGTSLSGRMIGNSANEAHFQAESYLKFNMGNNFCLKPGLVLGIDGKSKTAALVLRSNWSL*

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