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Report for Sequence Feature Glyma04g02464

Feature Type:gene_model
Chromosome:Gm04
Start:1728331
stop:1736649
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g02464
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63690AT Annotation by Michelle Graham. TAIR10: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 | chr1:23618490-23622082 FORWARD LENGTH=540 SoyBaseE_val: 1.00E-116ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004190GO-mf Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity SoyBaseN/AISS
GO:0008233GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidase activity SoyBaseN/AISS
PTHR12174Panther SIGNAL PEPTIDE PEPTIDASE JGI ISS
PTHR12174:SF30Panther SUBFAMILY NOT NAMED JGI ISS
PF04258PFAM Signal peptide peptidase JGI ISS
UniRef100_I1JT10UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT10_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q945B8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Growth-on protein GRO10 n=1 Tax=Euphorbia esula RepID=Q945B8_EUPES SoyBaseE_val: 8.00E-122ISS

Expression Patterns of Glyma04g02464
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g02464 not represented in the dataset
Glyma04g02464 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g02464 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g02464
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g02464
>Glyma04g02464.1   sequence type=CDS   gene model=Glyma04g02464   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCATGCATTCGTGAGCCTTATCGCACGCGGTTGGAAGCTGTTCGAGCACAGTGATGACGCCGGTAATGCCGCCGCCGCCACCGGAAGAGAATGCAAGGATGGCCTCCTCTGGTTCCACGACATCGGAAAGTTCGCTGCCGGCGATTCCTCCATGGTCGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGAGCCAGATCGAGTCCGGCGGCTTCAGCACCTTCATCGGCATCTACGACGGCCACGGCGGCCCCGATTGCTCCTGCTATGTCTGTGATAACTTGTTCCGCAATCTCCAAGAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATATGCATACCTGCTGTCATGCTTCCACTAGATGCAGGTACAAGACTGGAAAAAATGTTGGCAACTACTTCATCTGTGTCTGTGCAGCTGTACTCGCCACTTCGACCAGCTGTTGACGTAGCAGAAGTATTTCTTTGGATGATGGCAGTTCTTACCATATTGTGTGCATCATATTGGTCAGCTTGGACGACCCGAGAAGCAGCTATTGAACATGATAAGTTGCTAAAGGATGCTTCAGATGAACTCCCAAACACTAAATATGCTAGTGTTAGTGGAGTTGTAAATATGAATGTGAAAGCTACAGTCCTTTTTGTTGTATTTGCTTCGTGTTTCCTGTTTATGCTTTACAAACTGATGTCGTCGTGGTTCATTGATGTTTTGGTTGTTCTCTTCTGTATTGGTGGTATTGAGGGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAGGTGGTTCAAGCATGCTGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCTATCTCATACCTGACTTTGGCTGTTTCTCCATTCTGTATAACATTTTCCATTCTCTGGGCAGTTTATCGCAACGAATCCTTTGCCTGGATTGGTCAAGATATACTTGGAATAGCACTGATAATCACTTGTAGATTTCGCGACCCTTCTAATGAAGTTTACTTTTGTGTGATTCCTATGAGTAAAAGGAAAAGGAAAAGTCATCACCAGACTAAGATATGA
Predicted protein sequences of Glyma04g02464
>Glyma04g02464.1   sequence type=predicted peptide   gene model=Glyma04g02464   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFHAFVSLIARGWKLFEHSDDAGNAAAATGRECKDGLLWFHDIGKFAAGDSSMVVVQANQVLEDQSQIESGGFSTFIGIYDGHGGPDCSCYVCDNLFRNLQELYKMVCEPDETDLNICIPAVMLPLDAGTRLEKMLATTSSVSVQLYSPLRPAVDVAEVFLWMMAVLTILCASYWSAWTTREAAIEHDKLLKDASDELPNTKYASVSGVVNMNVKATVLFVVFASCFLFMLYKLMSSWFIDVLVVLFCIGGIEGLQTCLVALLSRWFKHAGESYIKVPFLGAISYLTLAVSPFCITFSILWAVYRNESFAWIGQDILGIALIITCRFRDPSNEVYFCVIPMSKRKRKSHHQTKI*






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